Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq14 167 3e-36 >seq14 Length=2364342 Score = 167 bits (184), Expect = 3e-36 Identities = 486/735 (66%), Gaps = 24/735 (3%) Strand=Plus/Plus Query 47797 ATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCT 47856 ||||||||||||| ||| | |||||| | |||||| | || || | ||||||||| Sbjct 844849 ATAACAAAATCATTAGGAGTTGTTTGTTGTAACATTAAATATATTGCATATACATAATCT 844908 Query 47857 CTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATA--AACAGTCTTGCT 47914 | ||||| ||||| || | || || ||| | |||||||| ||||| |||||| || Sbjct 844909 TTTGCATGACCCCAATCTCTAAATGTATCGATATTTCCTA-ATATAATAACAGT-GTGAA 844966 Query 47915 TACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCAC 47974 | || | | ||| | || | ||||||| || || ||||| |||||||||| Sbjct 844967 TTTTTTTAAATATTTTTGCTATACCCTTTGTAATTTTTTTTGTAACAAATGTTTCACCAC 845026 Query 47975 GTCTTGGAGATTCATGATTAAAAAGAATACCA-CTACAGGCATACATTCCGTATGATTCA 48033 |||||||| |||||||||||| | |||||| |||| | |||| |||||||| Sbjct 845027 GTCTTGGACTTTCATGATTAAATAATATACCATTTACA-CAAAACATATTATATGATTCT 845085 Query 48034 CGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGA 48093 | ||| || ||| ||| ||| | ||| | |||||| | |||||||| || |||| Sbjct 845086 CTATAATTTTTTGTTATATAGTGACTATATAATTTTGCTATCCCATAAGGTGAGACTGGA 845145 Query 48094 TAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCA----CCTTACCATAAAGTTCACT 48149 | || ||||| | || | || | || || | |||||||| | |||| Sbjct 845146 TTAAACGGTGTATTTTCATTTTG-ACATTCGGTTTGAATAGTATTACCATATAATTCAGA 845204 Query 48150 GGTGGATGCTTGAT-AGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAA 48208 || || || | || | || || ||| || |||| || | ||| || | Sbjct 845205 TGTTGAAGCATTATAAAATTTGA----TATTATCAATCTTTGATAATTTAATTGCTTCTA 845260 Query 48209 GCACTCTCAGGGTGCCTATGGCATCTGT---CTGACCAGTATACTCGGGCATCTCAAACG 48265 | ||||| || || || | |||| || | ||||| || || | ||||| Sbjct 845261 ATATTCTCAACGTACCAAT---AGCTGTACATTGTGCTGTATATTCAGGTAATTCAAAGC 845317 Query 48266 AAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAA 48325 || ||||||||||| ||||| | | |||||| || |||| ||||| | | | Sbjct 845318 TTACTTTTACATGACTTTGTGCAGCTAAATTATATATTTCATTTGGTTTTATTTTAGATA 845377 Query 48326 TAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCAT 48385 | | | || ||| || || ||| || |||||||| || ||||||| ||| Sbjct 845378 TTAAAGAAAATATATTACTATTATCAAGTAAATCACCATAATGTAAATTTAATTTTTCAA 845437 Query 48386 AAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCT 48445 | || ||||| ||||| | |||||||| | | | || | | | |||||||| | Sbjct 845438 ATATATGATCTATTCTTTTTGTATTAAATGTACTACACCTCCTAATCACCCCATGAACTT 845497 Query 48446 CATACCCCTTTTCAAGAAGAAGTTCTGCT-AAGTATGAACCATCTTGTCCTGTAATACCA 48504 |||| || ||||| | ||| ||||| ||| || ||||| ||||| |||||||| |||||| Sbjct 845498 CATATCCTTTTTCTAAAAGTAGTTC-GCTCAAATATGACCCATCCTGTCCTGTGATACCA 845556 Query 48505 GTGATTAAAGCAACT 48519 |||| |||||| Sbjct 845557 AATATTAGTGCAACT 845571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665490706506080