Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020
16-11-23] 444 sequences; 18,919,436 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq14 167 3e-36
>seq14
Length=2364342
Score = 167 bits (184), Expect = 3e-36
Identities = 486/735 (66%), Gaps = 24/735 (3%)
Strand=Plus/Plus
Query 47797 ATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCT 47856
||||||||||||| ||| | |||||| | |||||| | || || | |||||||||
Sbjct 844849 ATAACAAAATCATTAGGAGTTGTTTGTTGTAACATTAAATATATTGCATATACATAATCT 844908
Query 47857 CTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATA--AACAGTCTTGCT 47914
| ||||| ||||| || | || || ||| | |||||||| ||||| |||||| ||
Sbjct 844909 TTTGCATGACCCCAATCTCTAAATGTATCGATATTTCCTA-ATATAATAACAGT-GTGAA 844966
Query 47915 TACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCAC 47974
| || | | ||| | || | ||||||| || || ||||| ||||||||||
Sbjct 844967 TTTTTTTAAATATTTTTGCTATACCCTTTGTAATTTTTTTTGTAACAAATGTTTCACCAC 845026
Query 47975 GTCTTGGAGATTCATGATTAAAAAGAATACCA-CTACAGGCATACATTCCGTATGATTCA 48033
|||||||| |||||||||||| | |||||| |||| | |||| ||||||||
Sbjct 845027 GTCTTGGACTTTCATGATTAAATAATATACCATTTACA-CAAAACATATTATATGATTCT 845085
Query 48034 CGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGA 48093
| ||| || ||| ||| ||| | ||| | |||||| | |||||||| || ||||
Sbjct 845086 CTATAATTTTTTGTTATATAGTGACTATATAATTTTGCTATCCCATAAGGTGAGACTGGA 845145
Query 48094 TAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCA----CCTTACCATAAAGTTCACT 48149
| || ||||| | || | || | || || | |||||||| | ||||
Sbjct 845146 TTAAACGGTGTATTTTCATTTTG-ACATTCGGTTTGAATAGTATTACCATATAATTCAGA 845204
Query 48150 GGTGGATGCTTGAT-AGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAA 48208
|| || || | || | || || ||| || |||| || | ||| || |
Sbjct 845205 TGTTGAAGCATTATAAAATTTGA----TATTATCAATCTTTGATAATTTAATTGCTTCTA 845260
Query 48209 GCACTCTCAGGGTGCCTATGGCATCTGT---CTGACCAGTATACTCGGGCATCTCAAACG 48265
| ||||| || || || | |||| || | ||||| || || | |||||
Sbjct 845261 ATATTCTCAACGTACCAAT---AGCTGTACATTGTGCTGTATATTCAGGTAATTCAAAGC 845317
Query 48266 AAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAA 48325
|| ||||||||||| ||||| | | |||||| || |||| ||||| | | |
Sbjct 845318 TTACTTTTACATGACTTTGTGCAGCTAAATTATATATTTCATTTGGTTTTATTTTAGATA 845377
Query 48326 TAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCAT 48385
| | | || ||| || || ||| || |||||||| || ||||||| |||
Sbjct 845378 TTAAAGAAAATATATTACTATTATCAAGTAAATCACCATAATGTAAATTTAATTTTTCAA 845437
Query 48386 AAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCT 48445
| || ||||| ||||| | |||||||| | | | || | | | |||||||| |
Sbjct 845438 ATATATGATCTATTCTTTTTGTATTAAATGTACTACACCTCCTAATCACCCCATGAACTT 845497
Query 48446 CATACCCCTTTTCAAGAAGAAGTTCTGCT-AAGTATGAACCATCTTGTCCTGTAATACCA 48504
|||| || ||||| | ||| ||||| ||| || ||||| ||||| |||||||| ||||||
Sbjct 845498 CATATCCTTTTTCTAAAAGTAGTTC-GCTCAAATATGACCCATCCTGTCCTGTGATACCA 845556
Query 48505 GTGATTAAAGCAACT 48519
|||| ||||||
Sbjct 845557 AATATTAGTGCAACT 845571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665490706506080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |