Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 >seq6 Length=837512 Score = 138 bits (152), Expect = 1e-27 Identities = 449/689 (65%), Gaps = 9/689 (1%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| |||||||||| | || || ||||| ||||| || || ||||| Sbjct 429949 GAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCGAATCAAAAA 430008 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||||| |||||||| || || ||| | || |||||| | || || ||| Sbjct 430009 AATTTAGGAACAATTAAATGCAGTAATTTATGTTGTGAAATTATTGAATATACATCACCT 430068 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCT-TCCAAAGTATGTCAATGAAGA 76083 ||||| |||||||| ||||| || || || || | | |||| | ||| || ||| Sbjct 430069 GATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCATTATGCAAATT-TGTTGATAGAGA 430127 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | ||| ||| | ||||| | |||| || || || ||| |||| | |||| | Sbjct 430128 AAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTT 430187 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGC 76202 | | | | ||||| ||||||| |||||| ||| | ||| ||||| || |||| Sbjct 430188 AGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAGCG-GAAAGATCAAATAAAA 430246 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262 |||| ||||||||||| | || || ||||| | || ||| |||||| | | | | Sbjct 430247 GACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGAT 430306 Query 76263 ACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATC 76322 | ||| ||| || || ||||| || || | ||| | || |||||||| |||||| Sbjct 430307 ATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATT 430366 Query 76323 ACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 | || | | || | | ||||||||| ||| || | ||||| ||| | Sbjct 430367 ATGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTGGACCATATGAATCATATC 430426 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC 76442 | ||| ||| || |||||| | | || |||||||||||| | | || | | Sbjct 430427 AAGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGTGGAATGCAAAAGTCGATA 430486 Query 76443 TCAACTA---CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGA-AGGGTCTTCGTAAC 76498 || || || |||||| || | || || | ||| | | | || | | || Sbjct 430487 ATAAATATTGGGATTGGGAT-TTATTAAAAAAAAAAATAAGTAAACATGGATTAAGAAAT 430545 Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558 |||| | | ||||| ||||||||||| || || | ||||| || || ||||||||| Sbjct 430546 TCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCGCAAATTTTAGGAAATAATGAA 430605 Query 76559 TGCTTTGAACCATACACAACAAACATCTA 76587 | |||||||||||| |||| ||||| || Sbjct 430606 TCCTTTGAACCATATACAAGTAACATTTA 430634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566289038720