Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq11 208 1e-48 seq6 194 3e-44 >seq11 Length=1651515 Score = 208 bits (230), Expect = 1e-48 Identities = 197/250 (79%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||| ||| || || | |||||| ||| |||||||| ||||| ||||| ||| || Sbjct 1490878 TACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTC 1490937 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||||||||| || ||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 1490938 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1490997 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | ||| | |||| ||| ||||| || | ||||| || ||||| || ||||| Sbjct 1490998 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1491057 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTA---GTAAAA--TAATTATTTTAA 193385 || |||| ||||||||||| ||||||||||| || |||||| ||| || ||| | Sbjct 1491058 TCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTAAAAAGTAAATAATTTGA 1491117 Query 193386 ATAATATATA 193395 | || ||||| Sbjct 1491118 AAAAAATATA 1491127 >seq6 Length=837512 Score = 194 bits (214), Expect = 3e-44 Identities = 185/237 (78%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| ||||| |||| | || | || || || | ||||| ||| || Sbjct 386730 AATTTGCATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTT 386671 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| |||| |||||| ||| ||||||||||||||||||||||||||||| ||||| Sbjct 386670 GTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTG 386611 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || |||||||||||||| ||||| | ||| | |||| ||| ||||| || Sbjct 386610 ATCAGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGA 386551 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || ||||| || ||||| || |||| |||||||| || || ||||| Sbjct 386550 TGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 386494 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| |||| | || | ||| || |||| ||||| ||| |||||||| || Sbjct 386949 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGA 386890 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| |||||| || |||||||||||||| || ||||||||||| ||||||||||| || Sbjct 386889 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGG 386830 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||||||||| ||||||| ||| | ||| ||||||||| || | ||||| Sbjct 386829 GATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 386770 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || ||||| || |||| |||||||| || |||||||| Sbjct 386769 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722 Score = 183 bits (202), Expect = 5e-41 Identities = 167/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| |||| | || | ||| || |||| ||||| ||| ||| Sbjct 386273 ATTTGCATACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTA 386214 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||| |||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct 386213 TAGTCAGATAATGTTCTACCGTCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGA 386154 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || |||||||||||||| ||||| | ||| | |||| ||| |||||||| Sbjct 386153 TCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGAT 386094 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 | |||||| || || ||||||||||| |||| Sbjct 386093 GGCTCAACATCAAGGGTTATAGTTTTTCCTG 386063 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| |||| | || | || || |||| ||||| ||| || || || Sbjct 386495 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCA 386436 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 |||| ||||| ||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct 386435 GATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGT 386376 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| ||||| | ||| | |||| ||||||||| || | ||| Sbjct 386375 GGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCA 386316 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || ||||| || |||| ||||||||||| |||||||| Sbjct 386315 ACATCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACAAAGATTTGCAT 386266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899649406918080