Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq10 279 1e-69 seq6 190 4e-43 seq11 183 6e-41 seq13 86.0 1e-11 >seq10 Length=1559237 Score = 279 bits (308), Expect = 1e-69 Identities = 545/799 (68%), Gaps = 18/799 (2%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||| | ||| || |||||||||||| | || || | ||| Sbjct 1415754 CTTGTAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTGGAG 1415696 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | | |||| |||||||| ||| || |||||||||| ||||| ||||| | | Sbjct 1415695 CAACCTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTT 1415636 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | ||||| | ||| ||||||| | |||||| ||| Sbjct 1415635 GAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCA 1415576 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatt-taatatgatt 49810 || |||| ||||| ||| | | | | || || ||||||| || ||| | | | Sbjct 1415575 ACTGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGCAATTTATTTTCTAACAAGCT- 1415517 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| |||||||| |||||| || ||||| || || || ||| || |||||||| Sbjct 1415516 ---ATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATT 1415460 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | | ||||||| ||||||||||| ||||| Sbjct 1415459 ACTAAATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAATATTGCACAAAAAC 1415401 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | | | ||| ||||| || |||||||| ||| |||| |||||| | |||| Sbjct 1415400 TTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAA---AG 1415344 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 | || ||| |||||| || ||||| |||||| ||||| || | ||||||| Sbjct 1415343 AGTTCGTATCGTTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATAT 1415284 Query 50050 TTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTA 50109 |||| ||||| | |||||| | | | || | |||| Sbjct 1415283 TTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTA 1415224 Query 50110 ATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTC 50169 ||||| ||| ||||||| |||| | ||| | |||||||||||| | |||||| | | Sbjct 1415223 ATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTT 1415164 Query 50170 TTGCTTCTGAATA-CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATA 50228 | ||||| | || || ||||| || ||| | ||||||| || |||| || Sbjct 1415163 TGGCTTC-AATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATT 1415105 Query 50229 CCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTT 50288 |||||| ||||| || ||||||| || | ||| ||||||||||||||||| | ||| Sbjct 1415104 CCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTT 1415045 Query 50289 AAATTTTCCCAAG--ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATG 50346 |||||| | ||| ||||| ||| |||||||||||| |||||| |||||||||| Sbjct 1415044 -AATTTTTCAAAGTCTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATG 1414987 Query 50347 ATGCTACGGATTTTTTATA 50365 | || | | ||||||||| Sbjct 1414986 AGGCCTCAGCTTTTTTATA 1414968 >seq6 Length=837512 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| ||||| |||| ||||| || || |||||| Sbjct 386495 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCA 386436 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| | |||| || |||||||| ||||| || |||||||| |||||||||||| Sbjct 386435 GATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGT 386376 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| |||| ||| || | ||| Sbjct 386375 GGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCA 386316 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| ||||| || ||||| ||||| | ||| || ||||| Sbjct 386315 ACATCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACAAAGATTTGCAT 386266 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | ||| ||||||||||| |||| ||||| || ||||| ||||| Sbjct 386949 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGA 386890 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| | || || |||||||| ||||| || |||||||| |||||||||||||| Sbjct 386889 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGG 386830 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| ||||| ||| || || |||| |||||| | ||| || Sbjct 386829 GATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 386770 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||| ||||| || ||||||||||| | || || ||||| Sbjct 386769 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| |||||||| | ||||| || || || ||| Sbjct 386723 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCA 386664 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| || ||||| |||||||| ||||||||||| Sbjct 386663 GATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGA 386604 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| || | ||| || | || Sbjct 386603 GGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCA 386544 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || ||||| || ||||| ||||| | || |||||||| Sbjct 386543 ACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 386494 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||||||||| |||| ||||| || ||||| ||| Sbjct 386267 ATACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCA 386208 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| | || || ||||| || |||||||| |||||||| |||||||||||| Sbjct 386207 GATAATGTTCTACCGTCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGT 386148 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| || | ||| || | || Sbjct 386147 GGGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCA 386088 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || || || || ||||| || Sbjct 386087 ACATCAAGGGTTATAGTTTTTCC 386065 >seq11 Length=1651515 Score = 183 bits (202), Expect = 6e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| |||||||| || | |||||| || ||||| ||||||||||||| | |||| Sbjct 1490875 TATTACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATC 1490934 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || |||||||| ||||| || |||||||| ||||||||||| || |||||||||||||| Sbjct 1490935 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 1490994 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| ||||| ||| ||||| || | ||| || | ||| || || ||||| || || Sbjct 1490995 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 1491054 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||||||||| | ||| || |||||||| Sbjct 1491055 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1491090 >seq13 Length=2459074 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 129708 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTAT 129767 || ||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||| Sbjct 716974 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTAT 717033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984474399539400