Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 181 3e-40 seq13 154 4e-32 seq9 125 2e-23 seq7 122 3e-22 seq10 84.2 6e-11 >seq6 Length=837512 Score = 181 bits (200), Expect = 3e-40 Identities = 776/1210 (64%), Gaps = 30/1210 (2%) Strand=Plus/Minus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||| ||| |||| || || ||||| || | |||| | | |||||| || | Sbjct 430381 TTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAGCTTCTT 430322 Query 155371 CAGATGTAAATGCGATATCCATCTTGAAA-----AATGTGTCGGCTAAACCCTGAACTCC 155425 ||||| | ||| |||||| || ||| ||||| || ||||| || || ||||| Sbjct 430321 CAGATTCATATG-GATATC----TTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 430267 Query 155426 AATACCGACTGGGCGATGCCTGTAATT-GCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAA 155483 || || | || | ||| || | ||| | || | | |||||| ||| ||| || Sbjct 430266 TATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCG--CTTCTTTAACTGGATAATAA 430209 Query 155484 TTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTC 155543 || |||||||| |||| ||||||| || | | || || | || |||||| Sbjct 430208 TTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTT 430149 Query 155544 ACATAGTCAAATG--TTTTATCCTC-ATTTACAAACATACCAAGACCAATAGACGCCAGA 155600 | | | |||| |||| | ||| || ||||| | | | |||| || || | | Sbjct 430148 TTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAA 430089 Query 155601 TTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTCACAGCACAGGTTAG 155658 ||||| || || || | | || | ||||| || | ||| ||||| || | ||| Sbjct 430088 TTACAAACAGCTA-CTTCATCAGGT-GATGTATATTCAATAATTTCACAACATAAATTAC 430031 Query 155659 AACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATA 155718 | || || || |||||||| || || || |||||| ||||| ||||| || |||| Sbjct 430030 TGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATA 429971 Query 155719 GAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGG 155778 || ||||| || || || || || | | || | ||| | || | | Sbjct 429970 ACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTG 429911 Query 155779 CATTAATTTGCTTGTTGTATCTGCCTTCCGACT-CATATTTCATATACAGCGTTCGGTAA 155837 || |||| | || || | | || | || | ||||| |||| | || | Sbjct 429910 CAAGAATT-GTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAAT 429852 Query 155838 TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATT 155897 || ||||| | ||||| | || || || | || ||||| | | | ||| | Sbjct 429851 TCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTC 429792 Query 155898 TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCC 155957 ||||| | |||| | | |||||||| |||| ||||||||||||| || | || Sbjct 429791 TTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCA 429732 Query 155958 CTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCA 156017 | || | | || || | || ||||| || | || ||||| ||||| |||||| Sbjct 429731 CGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCT 429672 Query 156018 GGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCT 156074 | ||| ||| || | ||| | ||||||| ||| || || || || ||| |||||| Sbjct 429671 GAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCT 429612 Query 156075 ACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCA 156134 ||||| | || || | ||| || || | || ||| || | | |||||| || | ||| Sbjct 429611 ACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCA 429552 Query 156135 TTGGTTCCGCGAATATGCGAACCAGATGAGCG--AACATTATGAATATGTAGTCCAATAC 156192 || ||||| | || | ||| ||||| || || || | | | || |||| Sbjct 429551 TTAGTTCCTCTGATGTAAGAATTT--TGAGCTCTAATATCTTGTACAGCCACACCTATAC 429494 Query 156193 CACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAG 156252 | |||| |||| ||| || |||| ||||| || | || |||||||| || | Sbjct 429493 CTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTG 429434 Query 156253 AATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGT 156312 ||||| || |||||||| || | |||| ||| | ||| |||| ||||||||| | | Sbjct 429433 AATCAGATTTCATTGATAATAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAAT 429374 Query 156313 TGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCT 156372 | |||| |||||| || |||||| ||||||| || | ||||| ||| || || || Sbjct 429373 TAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTCTA 429314 Query 156373 TAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAG 156432 | ||| ||||||| | || || | ||||| || ||||| | | |||||||| Sbjct 429313 AAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGAG 429254 Query 156433 GACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACC 156492 |||| || | ||| || ||| || | | ||| | | ||| | |||||||| | Sbjct 429253 GACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAATC 429194 Query 156493 CGAAATAATC 156502 | |||||||| Sbjct 429193 CAAAATAATC 429184 >seq13 Length=2459074 Score = 154 bits (170), Expect = 4e-32 Identities = 235/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || ||||| ||| || ||||| ||||| ||||| |||| | ||| || | || || | Sbjct 1118866 CTTCTTTTAGAACCTACTGCATCTATTTCATCAATAAAAACAATACAAGGTGCATGTTTT 1118925 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | ||| || ||| | ||||||| | ||| || | ||||||| |||||||| || Sbjct 1118926 TTTGCAGTTTGAAAAAGCTCTCTTATTCTTCTTGCACCTACACCAACAAACATTTCTTCA 1118985 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | ||| |||| || || | |||||||||||| ||||| | ||||| || Sbjct 1118986 AATTCTGAACCAGATGCTTGGATAAAGGGTACATTTGCTTCCCCTGCAATAGCCCTAGCA 1119045 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | ||| || |||||||||||| || ||||| | || || || | |||||| Sbjct 1119046 ATTAATGTTTTTCCTGTTCCAGGTTCACCTGATAATAATATACCTTTGGGCAATTTTGCA 1119105 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 || || |||| || | | |||||| | || | ||||| | |||||| | | Sbjct 1119106 CCTATTTTAGTAAATTTATCTGAATTTTTTAAATAATCAATTATTTCTTGAAGTTCTTGT 1119165 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | |||||||||||| |||||| || ||||| Sbjct 1119166 TTTACTTCATCACATCCTTTTACATCTGCTAAAGT 1119200 >seq9 Length=1306843 Score = 125 bits (138), Expect = 2e-23 Identities = 326/483 (67%), Gaps = 17/483 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | || | || || ||||| |||||| |||| |||||| || Sbjct 549544 CTATCAAATCTTCCTGGTCTTGTAATAGCGGGATCTAAAATATCGACTCTATTTGTTCCT 549603 Query 288910 GCCAATACAACAA-TAGAT--TCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTT 288964 || || ||||| | | ||| | | | | || |||||||| || || || | Sbjct 549604 GCTAAAACAACTACTTGATCATTAGATGTATGGAACCCATCCAT--TTCAACAAGCATCT 549661 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCtt 289023 |||| | || | ||| |||||||||||| || | || | ||| | | | || || Sbjct 549662 GATTTAAAGTATTTTCTCTTTCATCATTTCCTCCACCTGCAAAACCTCCTTTTGATCTTT 549721 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 || | ||||||||||||||||| || || ||||| | | | || | || || ||| || Sbjct 549722 TTCGT-CCAACAGCATCAATTTCATCTATAAAAATAATAGATGGTGCATGTTTTCTTGCT 549780 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 ||||||||||||||| || | |||| ||| | |||||| | | ||| | ||| ||| Sbjct 549781 TGTGCAAATAATTCTCTAACTCTTGATGGTCCGATTCCAACAAATACTTCAATAAAATCA 549840 Query 289144 --GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 | |||| | || || | ||||| ||||| || || || || | || | | Sbjct 549841 CTTCCACTGATA--TTAAAAAAAGGAACATTAGCTTCACCAGCAACAGCTTTTGCTAATA 549898 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 || || || ||||| |||| || ||||| | || ||||||| |||||| || Sbjct 549899 AAGTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGCACC-T 549957 Query 289262 CAGACTT-ATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTT 289319 | |||| |||||| | | || | ||| ||||| || |||| |||| || ||| | ||| Sbjct 549958 AATACTTGATATTT-TGATGGATTTTTCAAAAAATCAACAAATTCCATAATTTCTTCTTT 550016 Query 289320 TGC 289322 ||| Sbjct 550017 TGC 550019 >seq7 Length=1041357 Score = 122 bits (134), Expect = 3e-22 Identities = 274/404 (68%), Gaps = 21/404 (5%) Strand=Plus/Plus Query 380962 AATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACC 381021 || |||| ||| ||| | | |||||| | | |||||||||||| | || Sbjct 912069 AACGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAATTATTT 912128 Query 381022 AATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCC 381081 ||| |||| ||||| | ||||| |||||||||||||| ||||| || ||| || Sbjct 912129 CATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCT 912188 Query 381082 GATTATGATAATTGTG-ATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATAT 381140 || ||| | | | || || |||||||| | ||| ||||| || ||||||||| |||| Sbjct 912189 GAATAT-ACAGATATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATAT 912247 Query 381141 CATAGACC-AGCTAAAAA--ATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGC 381197 ||| | | |||||| |||| ||| | | | ||| | ||| | ||| Sbjct 912248 TATAAATTTAATTAAAAACGATCCG---ACATGTA------GACGAATTATTTTATGTGC 912298 Query 381198 GTGGAATCCTTGCCAGATTAA--TGATATGGCTTTACCACCTTGCCATATTTTATGCCAG 381255 |||||| | ||||| | | | ||||| ||||| ||||| ||||||||||| || Sbjct 912299 ATGGAATG--TAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAA 912356 Query 381256 TTCAATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTT 381315 || |||||| | ||| || ||| ||| | | ||||| | ||||| | Sbjct 912357 TTTTATGTTTTTGATGGAAAA---TTATCATGTATTATGTATCAAAGATCTTGTGATTTA 912413 Query 381316 GGTCTGGGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTAC 381359 ||||| ||||||||||||||||||||||| |||||||| |||| Sbjct 912414 GGTCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTAC 912457 >seq10 Length=1559237 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 408942 AAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCG 409001 ||| || |||| |||||| |||||||| |||||||||||| ||||| |||||||||||| Sbjct 306169 AAGATCCATTAGCTCAGT-GGTTAGAGCGTCGGTCTTATGTACCGAAGGTCGTGGGTTCG 306111 Query 409002 AGTCCCACATAGAACATT 409019 | ||||||| || |||| Sbjct 306110 AAACCCACATGGATCATT 306093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809227197628