Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq7 127 3e-24 seq3 105 8e-18 >seq7 Length=1041357 Score = 127 bits (140), Expect = 3e-24 Identities = 317/470 (67%), Gaps = 25/470 (5%) Strand=Plus/Plus Query 172529 TGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTG 172588 ||| ||||| |||||||| |||||||||||||| || || ||| |||||| || | Sbjct 912143 TGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGA-TA 912201 Query 172589 TG-ATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTAC 172647 || || | ||||| | || |||| || || || |||| ||| ||||| | |||| Sbjct 912202 TGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAA---AAAATATTATAAATTTAA 912258 Query 172648 ---AAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGT---TGGAATGTACCTCAAC 172701 ||||| | || | ||||| | || || || || || ||||||||| | Sbjct 912259 TTAAAAACGATCCGACATGTAGACGAAT--TATTTTAT-GTGCATGGAATGTAAAAGATT 912315 Query 172702 TTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCA--Gaaaaaa 172759 | ||| |||||| | |||||||| |||| |||| ||||||||||| || || Sbjct 912316 TAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 912375 Query 172760 aTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTA 172819 | ||| | ||| | ||||||||||| ||||||||| | || || || | Sbjct 912376 AATTATCATGTATTATG-----TATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATT 912430 Query 172820 TAATATTGGATTTTATTC-ATTTTTA-ATACTTGTGTTAAGTAAATGGTGCAATTTAACT 172877 ||||||| | ||||| || |||| ||| | || || || || |||||| Sbjct 912431 CAATATTGCTTCCTATTCTATATTTACATA--TATGATAGCACAAGTATGTAATTTACAA 912488 Query 172878 CCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCT 172937 |||| | ||||| ||| || ||| ||| ||| || ||| |||||||||||| Sbjct 912489 CCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGC 912548 Query 172938 TTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATT 172987 ||||| || || ||||| |||| ||| ||| |||| || | | ||||||| Sbjct 912549 TTAAAAGTCCAGTTAAATAGAACACCCTATCCTTTCCCTACTCTTAAATT 912598 >seq3 Length=546028 Score = 105 bits (116), Expect = 8e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 194586 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 194645 |||||| |||||||| ||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 423305 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 423364 Query 194646 GCATGCTAGAAGTCATGGGCAAGTAACTACT-TTACATCGACAACCAAATTGTGGTCGTT 194704 ||||| |||||| || | |||||| ||||| ||||||||| || | | Sbjct 423365 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACAA-GACAACCAACAGAAGGAAGAT 423423 Query 194705 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 194764 | || ||| ||||||||||||||||||||||||| ||| ||||| || ||||| Sbjct 423424 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCTCATGGAT 423483 Query 194765 CTACTCAATTCTTAAATGAA 194784 || || || | ||||| ||| Sbjct 423484 CTGCTAAAATGTTAAAGGAA 423503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632486089682720