Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq11 150 1e-31 seq6 147 2e-30 >seq11 Length=1651515 Score = 150 bits (166), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| | || || ||||||||||||||||| || | | || | ||| || Sbjct 1490879 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1490938 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| ||||| | || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 1490939 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1490998 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | |||| ||| ||| |||| | || ||||| |||| || |||||||| || ||||| Sbjct 1490999 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1491058 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT--AAAACGTA 29797 || ||||| ||||| ||||| || |||||||| ||||||| Sbjct 1491059 CCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTA 1491100 >seq6 Length=837512 Score = 147 bits (162), Expect = 2e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || ||||||||||||||||| ||||| | | || | ||| || | |||||| ||| Sbjct 386462 GTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCA 386403 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 || | || |||||||| ||||| || |||||||| ||||| ||||| |||||| | ||| Sbjct 386402 GCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTG-AATTTTAGCTTT 386344 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| |||| | ||| ||||| |||| || |||||||| || ||||| || ||||| || Sbjct 386343 AACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAAAGT 386284 Query 29769 TTTAACAAATATCTGCAT 29786 ||| ||||| || ||||| Sbjct 386283 TTTTACAAAGATTTGCAT 386266 Score = 138 bits (152), Expect = 9e-28 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || ||||||||||||||||| || || | | || | | ||| || | |||||| || Sbjct 386690 GTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCG 386631 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | || |||||||| ||||| || |||||||| ||||| ||||| |||||| | ||| Sbjct 386630 GCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTG-AATTTTAGCTTT 386572 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| |||| | || ||||| | || || |||||||| || ||||| || ||||| || Sbjct 386571 AACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGT 386512 Query 29769 TTTAACAAATATCTGCAT 29786 ||| || || |||||||| Sbjct 386511 TTTTACGAAAATCTGCAT 386494 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | | || ||||| | || |||||||||||||||||||| || | Sbjct 386948 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 386889 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || || | |||||| ||||| | || |||||||| ||||| || || Sbjct 386888 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 386829 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| |||||| | ||| || |||| | ||| || || |||| || Sbjct 386828 ATACCTTCTTTATCTTG-AATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 386770 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 386769 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | | || ||||| | || |||||||||||||||||||| || | Sbjct 386264 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 386205 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || || | ||| || |||||| | || |||||||| ||||| || || Sbjct 386204 AATGTTCTACCGTCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGGG 386145 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| |||||| | ||| ||| |||| | || || || | || || Sbjct 386144 ATACCTTCTTTATCTTG-AATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCAAC 386086 Query 29739 TTCAAGAGTTATAGTTTTGCC 29759 ||||| ||||||||||| || Sbjct 386085 ATCAAGGGTTATAGTTTTTCC 386065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217115482604