Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq7 120 4e-22 seq3 111 2e-19 seq6 91.5 2e-13 >seq7 Length=1041357 Score = 120 bits (132), Expect = 4e-22 Identities = 311/467 (67%), Gaps = 19/467 (4%) Strand=Plus/Plus Query 168656 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTG 168715 ||| |||||||||||||| |||||||||||||| || || ||| |||||| || | Sbjct 912143 TGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGA-TA 912201 Query 168716 TG-ATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTAC 168774 || || | ||||| | | |||| || || || |||| | | ||||||| | Sbjct 912202 TGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATTTAATTA 912261 Query 168775 ACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT---TGGGATGTACCACAACTTG 168831 | ||| ||||| | |||| |||| || || || || ||| ||||| | | | | Sbjct 912262 AAAACGATCCGACATGTAGACGAAT--TATTTTAT-GTGCATGGAATGTAAAAGATTTAG 912318 Query 168832 ATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTA----AGGAAAAAA 168887 || |||||| | || |||||||| | |||| ||||||||||| | | |||| Sbjct 912319 ATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAAT 912378 Query 168888 TCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTAT 168947 | ||| | ||| | |||||||||||| ||||||||| | || || || | Sbjct 912379 T--ATCATGTATTAT-----GTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTC 912431 Query 168948 AATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACGCCT 169007 ||||||| | ||||| | || ||| | || || || |||||||| || Sbjct 912432 AATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCA 912491 Query 169008 GGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTA 169067 | | ||||| ||| || ||| ||| ||| || ||| || ||||||||| ||| Sbjct 912492 GCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGCTTA 912551 Query 169068 AAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 || || || || || |||| ||| ||| |||| || | | ||||||| Sbjct 912552 AAAGTCCAGTTAAATAGAACACCCTATCCTTTCCCTACTCTTAAATT 912598 >seq3 Length=546028 Score = 111 bits (122), Expect = 2e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193790 TAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 193849 |||||| |||||||| ||||| | |||||| | | ||||||||||| | |||||||| Sbjct 423305 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 423364 Query 193850 GCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193908 ||||| |||||| |||| | |||| ||||| ||||||||| || | | Sbjct 423365 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 423423 Query 193909 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTG 193968 | || ||| ||||||||||||||||||||||| | ||| ||||| || |||||| Sbjct 423424 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCTCATGGAT 423483 Query 193969 CTACTCAATTCTTGAATGAA 193988 || || || | || || ||| Sbjct 423484 CTGCTAAAATGTTAAAGGAA 423503 >seq6 Length=837512 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 |||||||| || |||| |||||||| | |||||||||||| | |||||||| ||| Sbjct 183227 ATTTTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 183168 Query 193854 GCTAGAAGTC-ATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCA 193912 |||||| || | | | || | | || ||| |||||||||| | ||||| || | Sbjct 183167 GCTAGATCTCGAGGTCCTAGGCAATTATTAACA-CGACAACCAACTGAAGGTCGATCAAA 183109 Query 193913 AGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTG 193951 || ||||| |||||| |||| |||||||| | ||| || Sbjct 183108 AGAAGGAGGATTAAGACTTGGTGAAATGGAAAGAGATTG 183070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635174074764320