Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq7 109 7e-19 seq10 107 3e-18 seq3 107 3e-18 seq6 89.7 7e-13 >seq7 Length=1041357 Score = 109 bits (120), Expect = 7e-19 Identities = 422/644 (66%), Gaps = 23/644 (4%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| ||||||||||| ||| | ||| | | |||||||||||| || ||| ||| | Sbjct 911947 AATTTAATTTAAGTGAAT--ATTTT-CCATTATTAACAACAAAAAAATTA-TTTGTAAGA 912002 Query 180417 A-TATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAAT 180475 ||| || |||| || ||||| | || | || ||||||| ||| ||| Sbjct 912003 GGTATCATTGAAGAGTTGCTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 912062 Query 180476 GATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGA 180535 || | || | | | ||| | | |||||| | | ||||||||||| | | | Sbjct 912063 GAAAAAAACGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAA 912122 Query 180536 TTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATG 180593 || |||| | || ||| ||| ||||| |||||||| |||||||||||||| || Sbjct 912123 TT--ATTTCATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACT 912180 Query 180594 CAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAATTA 180652 || ||| |||||| || | || || | | |||| | ||||| | || || ||| Sbjct 912181 TTGGTGCTGAATATACAGA-TATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTA 912239 Query 180653 AGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGT 180712 | | ||||| | || ||||| |||| ||| || |||| || || | Sbjct 912240 AAAAATATTATAAATTTAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGCA 912299 Query 180713 TGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTT 180772 ||||||||| | | ||| | ||||| | || || ||||| ||| |||||| Sbjct 912300 TGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTT 912359 Query 180773 TATGTTAGAAATA-AAATTTATTTAG-ATTGCCAATTGTATCAAAGATCTGCAGATTTAG 180830 |||||| || ||| |||| | ||| |||||||||||||| ||||||| Sbjct 912360 TATGTTTTTGATGGAAAATTATCATGTATTA-----TGTATCAAAGATCTTGTGATTTAG 912414 Query 180831 GATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTCAAA 180888 | | ||||| |||| |||||||||| |||||| || ||| ||| || | | | || Sbjct 912415 GTCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGATAGCAC-AA 912473 Query 180889 GTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTC 180948 || || |||||| || | ||||||| || || || ||| |||||| ||| Sbjct 912474 GT-ATGTAATTTACAACCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAA 912532 Query 180949 TAACCATATTGACCAATTAAAAATTCAATTAAGCAGAA-ACCCT 180991 ||| ||| |||| |||||| | || |||| |||| ||||| Sbjct 912533 TAATCATGTTGAAAGCTTAAAAGTCCAGTTAAATAGAACACCCT 912576 >seq10 Length=1559237 Score = 107 bits (118), Expect = 3e-18 Identities = 254/380 (67%), Gaps = 14/380 (4%) Strand=Plus/Plus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 ||| || |||||| | |||||| ||||||||||| | || ||| | ||||||||| Sbjct 468134 TAAAGTCGCTCAGCTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGTGAATC 468193 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | ||||||| ||||| | || || ||||| ||| |||| || |||| Sbjct 468194 ATCATTACAACAAACTATTATAAATATGGCGCAAACATTTGTCGGTTCAAACAATATAAA 468253 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || || ||||| ||| || ||||||| |||| ||||| ||||||||| || | || Sbjct 468254 TTTTCTAGAACCCTGTGGACAATTTGGTAGTAGAAAAGAAGGCGGTAAAGATGCATCAGC 468313 Query 173068 ATCAAGGTATATTTATACTAAACC-GCATAAAATTTTAAAATATATATTTAGAGAAGAAG 173126 | | |||||||| | ||| |||| |||| | | || || |||||||| ||| | Sbjct 468314 AGCTAGGTATATATTTACAAAACTTGCATCATCTACTAGAAG-TATATTTAATGAATTTG 468372 Query 173127 ATGACCCTATTTTAAT---TTTTACTCCGGAAGGAGAA-----CCAACCAC----TTTTG 173174 | || || ||||||| ||| | | || ||| || | |||||| || | Sbjct 468373 ACGATCCAATTTTAAAATATTTAAATGAAGAGGGACAAAAAATCGAACCACAATATTATA 468432 Query 173175 TTCCCGTGATCCCTCTTATATTAATTAATGGTTCAATTGGTATAGGAACTGGATGGTCGT 173234 | || || || ||| || || | ||||| | || ||||||||||||| || | Sbjct 468433 TACCAGTTATTCCTACAATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 468492 Query 173235 GTTTTATTCCTCAATATAAT 173254 |||||||| | |||||| Sbjct 468493 CATTTATTCCAAACTATAAT 468512 >seq3 Length=546028 Score = 107 bits (118), Expect = 3e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 201917 TAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 201976 |||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 423305 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 423364 Query 201977 GCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGT 202035 ||||| |||||| || | |||| | |||||| | ||||||| || | | Sbjct 423365 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 423423 Query 202036 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 | || |||||| |||||||||||||||||||||| ||||||||| Sbjct 423424 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTAT 423469 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/170 (73%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 201076 TAAATTATCCTCAAAAACCACTTGT---TACAACTGACATTGCAGAAT-TTAATGGTCTA 201131 || ||||||| ||||||||| | || ||||| | | |||||| || | | || Sbjct 422104 TATATTATCCACAAAAACCATTAGTATGTACAAAAGCTA---CAGAATATTTACATTTTA 422160 Query 201132 AATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAAT 201191 || || | || ||| || ||||||||||||||||| ||||| || ||||||||| Sbjct 422161 AA-GATTTACCAGCTGGAATAAATGCAATTGTAGCAATCATGTGTTATACAGGATACAAT 422219 Query 201192 CAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 |||||||||||| | || | ||| || |||| ||||| | |||||||| Sbjct 422220 CAAGAAGATAGTTTGATCATGAATCAATCATCCATTGATCGGGGTTTATT 422269 >seq6 Length=837512 Score = 89.7 bits (98), Expect = 7e-13 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 201921 ATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 201980 |||||||| || |||| ||| ||||| | |||||||||||| | |||||||| ||| Sbjct 183227 ATTTTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 183168 Query 201981 GCGAGAAGTCATGGT-CAAGTAACAACATTACATCGTCAACCAAACTG-TGGTCGGTCCC 202038 || ||| || ||| | || | | |||| || ||||| ||||| ||||| || Sbjct 183167 GCTAGATCTCGAGGTCCTAGGCA-ATTATTAACACGACAACC-AACTGAAGGTCGATCAA 183110 Query 202039 AAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 202078 ||| || ||||||||| |||| |||||||||| |||||| Sbjct 183109 AAGAAGGAGGATTAAGACTTGGTGAAATGGAAAGAGATTG 183070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655276363196000