Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq7 123 3e-23 seq3 102 1e-16 >seq7 Length=1041357 Score = 123 bits (136), Expect = 3e-23 Identities = 314/469 (67%), Gaps = 23/469 (5%) Strand=Plus/Plus Query 171741 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTG 171800 ||| |||||||||||||| |||||||||||||| || || ||| |||||| || Sbjct 912143 TGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGATAT 912202 Query 171801 TTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTAC- 171859 || | ||||| | || |||| || || || |||| ||| ||||| | |||| Sbjct 912203 GCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAA---AAAATATTATAAATTTAAT 912259 Query 171860 --AAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGT---TGGAATGTACCTCAACT 171914 ||||| | || | ||||| | || || || || || ||||||||| | | Sbjct 912260 TAAAAACGATCCGACATGTAGACGAAT--TATTTTAT-GTGCATGGAATGTAAAAGATTT 912316 Query 171915 TGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTCA--Gaaaaaaa 171972 ||| |||||| | |||||||| || | |||| ||||||||||| || ||| Sbjct 912317 AGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAA 912376 Query 171973 TCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTAT 172032 ||| | ||| | ||||||||||| ||||||||| | || || || | Sbjct 912377 ATTATCATGTATTATG-----TATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTC 912431 Query 172033 AATATTGGATTTTATTC-ATTTTTA-ATACTTGTGTTAAGTAAATGGTGCAATTTAACTC 172090 ||||||| | ||||| || |||| ||| | || || || || |||||| | Sbjct 912432 AATATTGCTTCCTATTCTATATTTACATA--TATGATAGCACAAGTATGTAATTTACAAC 912489 Query 172091 CAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCTT 172150 ||| | ||||| ||| || ||| ||| ||| || ||| |||||||||||| | Sbjct 912490 CAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGCT 912549 Query 172151 TAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATT 172199 |||| || || ||||| |||| ||| ||| |||| || | | ||||||| Sbjct 912550 TAAAAGTCCAGTTAAATAGAACACCCTATCCTTTCCCTACTCTTAAATT 912598 >seq3 Length=546028 Score = 102 bits (112), Expect = 1e-16 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193343 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 193402 |||||| |||||||| ||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 423305 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 423364 Query 193403 GCATGCTAGAAGTCATGGGCAAGTGACTACT-TTACATCGACAACCAAATTGTGGTCGTT 193461 ||||| |||||| || | | |||| ||||| ||||||||| || | | Sbjct 423365 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACAA-GACAACCAACAGAAGGAAGAT 423423 Query 193462 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 193521 | || ||| ||||||||||||||||||||||||| ||| ||||| || ||||| Sbjct 423424 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCTCATGGAT 423483 Query 193522 CTACTCAATTCTTAAATGAA 193541 || || || | ||||| ||| Sbjct 423484 CTGCTAAAATGTTAAAGGAA 423503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628527711651840