Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6 206 5e-48 seq11 178 3e-39 >seq6 Length=837512 Score = 206 bits (228), Expect = 5e-48 Identities = 183/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | ||||||||| | ||| |||||||| || || || || |||| Sbjct 386722 TACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAG 386663 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||||||| ||||||| ||||||||| ||||| |||| |||||||||||| |||| Sbjct 386662 ATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAG 386603 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| ||||||||||| |||||| || || | Sbjct 386602 GAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAA 386543 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || || || || || || ||||| || |||||||| Sbjct 386542 CATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 386494 Score = 201 bits (222), Expect = 2e-46 Identities = 182/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | ||||||||| | ||||||||||| || || || ||||||| Sbjct 386494 TACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAG 386435 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| |||| || || |||| |||||||||||| || |||| |||||||||||| || | Sbjct 386434 ATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTG 386375 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| ||||||||||| |||||| ||||| | Sbjct 386374 GAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAA 386315 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || || || || || || |||||||| || ||||| Sbjct 386314 CATCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACAAAGATTTGCAT 386266 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || | | |||||| || | ||||||||||| || || ||||| ||||| Sbjct 386949 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGA 386890 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||||||||||||||| |||||||||||| || |||| |||||||||||| || || Sbjct 386889 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGG 386830 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||||||||| || ||||| || |||||||| ||||| ||||| || Sbjct 386829 GATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 386770 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || || || || ||||| || || ||||| Sbjct 386769 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722 Score = 179 bits (198), Expect = 7e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | |||||| || | ||||||||||| || || ||||| |||| Sbjct 386266 TACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAG 386207 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||||||||||||||| ||| ||||||||||| |||| |||||||||||| || | Sbjct 386206 ATAATGTTCTACCGTCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTG 386147 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| ||||||||||| ||||| || || | Sbjct 386146 GGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCAA 386087 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 | || | ||||| || || |||| Sbjct 386086 CATCAAGGGTTATAGTTTTTCCTG 386063 >seq11 Length=1651515 Score = 178 bits (196), Expect = 3e-39 Identities = 158/198 (80%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || ||||| || || ||||| ||||||| |||| || ||||||| |||||||||| Sbjct 1490891 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1490950 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 || || |||| |||||||||||| || || |||||||| |||||||| || |||||||| Sbjct 1490951 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1491010 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||||||||| |||||| ||||| || || | ||| || || || || || || || Sbjct 1491011 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1491070 Query 82794 TTTACAAATATCTGCATT 82811 |||||||| || |||||| Sbjct 1491071 TTTACAAAGATTTGCATT 1491088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981821614630516