Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 8e-14 >seq6 Length=837512 Score = 93.3 bits (102), Expect = 8e-14 Identities = 101/136 (74%), Gaps = 11/136 (8%) Strand=Plus/Minus Query 81647 GTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA---------- 81696 ||| |||| || || || ||||| ||||||| ||||||| ||||||||| Sbjct 386234 GTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGCTTTCCA 386175 Query 81697 -CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT 81755 |||| |||| |||||||||| | || | || |||| ||||||||||| || ||||| Sbjct 386174 GCAAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTA 386115 Query 81756 ATATTTTCAATCGTAT 81771 | ||||||||| |||| Sbjct 386114 ACATTTTCAATGGTAT 386099 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/132 (74%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || || || || |||||||| ||||||| |||||||| ||| Sbjct 386686 ATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAA 386627 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | ||| | || |||| ||||||||||| || ||||| | || Sbjct 386626 AAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACAT 386567 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 386566 TTTCAATGGTAT 386555 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/136 (73%), Gaps = 11/136 (8%) Strand=Plus/Minus Query 81647 GTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA---------- 81696 ||| |||| || || || ||||| ||||||| ||||||| ||||||||| Sbjct 386918 GTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCA 386859 Query 81697 -CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT 81755 | || |||| |||||||||| | || | || |||| ||||||||||| || ||||| Sbjct 386858 GCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTGGCTTTA 386799 Query 81756 ATATTTTCAATCGTAT 81771 | |||||||| |||| Sbjct 386798 ACGTTTTCAATAGTAT 386783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903406186067840