Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6 291 2e-73 seq7 111 4e-19 seq13 96.9 8e-15 seq8 95.1 3e-14 >seq6 Length=837512 Score = 291 bits (322), Expect = 2e-73 Identities = 643/955 (67%), Gaps = 17/955 (2%) Strand=Plus/Plus Query 110215 TTGTTACAAAGGAAGTATTTAATGTCGTAAAGAAACATAAAACAAAACTAAATAATATTA 110274 || ||| || ||||||| | || | | | | |||||||| ||||||| | Sbjct 429098 TTATTAGTAAAGAAGTATATGATTTTATTATGGAACATAAAGATCGTTTAAATAAAGAAA 429157 Query 110275 TCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTT 110334 | |||||||| | || | | || || |||||||| || ||||| | ||| | ||| Sbjct 429158 TAGATTATACAAGAGATTTTAATTACGATTATTTTGGATTTAAAACATTAGAAAGGTCTT 429217 Query 110335 ATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTG 110394 | ||| | ||| | ||| | || |||||||||||||| || | || | | || Sbjct 429218 ACTTATTACGTATTAATAATAAAATTATTGAACGTCCTCAGCATTTATTAATGAGAGTAT 429277 Query 110395 CGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTA 110454 | || || || ||| | ||||| || || | | | ||| |||| || || | Sbjct 429278 CTATAGGAATACATATAGATGATCTTGAAAAGGCTTTAGAAACTTATCATTTAATGTCAC 429337 Query 110455 AAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAAT 110514 |||| | || ||||||||||||||| ||||||| | ||||| || ||| Sbjct 429338 AAAAATATTTTACTCATGCTACTCCTACATTATTTAATTCGGGAACACCAAGACCCCAAA 429397 Query 110515 TGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTC 110574 || |||| |||||| | || ||| || |||||| || |||||||| | ||| | Sbjct 429398 TGTCTTCATGCTTTTTATTATCAATGAAATCTGATTCAATAGAAGGTATATTTGAAACA- 429456 Query 110575 TTAAAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGAT 110633 |||||| || ||| | ||| ||||| | ||||| || ||| | || || ||| Sbjct 429457 TTAAAGCAATGTGCATTGATTAGTAAAACAGCAGGAGGTATAGGTGTGGCTGTACAAGAT 429516 Query 110634 ATTCG--CTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTC 110691 ||| | ||||||| | | ||| | | | || ||| |||| ||| | || | Sbjct 429517 ATTAGAGCTCAAAATT--CTTACATCAGAGGAACTAATGGTATATCAAATGGTTTAGTCC 429574 Query 110692 CAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAA 110748 | ||||||||||| || || || || |||| |||||| |||||||||| || |||| Sbjct 429575 CGATGTTAAGAGTTTTTAATGATACAGCAAGATATGTAGATCAAGGTGGAGGAAAAAGAA 429634 Query 110749 ATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAAC 110808 | || || |||||| | ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 429635 AAGGTTCTTTTGCTGTATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTAGATT 429694 Query 110809 TTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGA 110868 | | |||||||| || |||||| ||||| ||||||||||||||||| || ||| Sbjct 429695 TAAGAAAAAATCATGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGG 429754 Query 110869 TTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTC 110928 | | |||||||| |||||| | || | |||||| | ||| || | ||||| ||| Sbjct 429755 TACCTGATTTATTTATGAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGTGCCCTA 429814 Query 110929 ATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAAT 110988 || | ||| || || ||| | || |||| |||||| | | || ||||| Sbjct 429815 ATGAATGTCCAGGCTTAAGTGAAACCTGGGGTGAAGAATTTGAAAAATTATATACAAAAT 429874 Query 110989 ATGAAAAAGAAGGCAAGTTTCGCAAACA---AATTCCAGCTCAAGAACTTTGGTTCAAAA 111045 | ||| ||||| || || | ||| | ||||| || ||||| | ||||| | Sbjct 429875 ACGAAGAAGAA---AATCTTGGAAAAAAAACAATTCTTGCACAAGATTTATGGTTTGCTA 429931 Query 111046 TCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAAT 111104 | | || ||| | |||||||| || ||||| || ||||||||| ||| |||| Sbjct 429932 TATTACAAAGCCAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCAT-GTAAT 429990 Query 111105 CGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 ||||| ||||||| ||||||||||||||||| | |||||||| || |||| Sbjct 429991 TCTAAATCGAATCAAAAAAATTTAGGAACAATTAAATGCAGTAATTTATGTTGTG 430045 Score = 109 bits (120), Expect = 1e-18 Identities = 472/742 (64%), Gaps = 61/742 (8%) Strand=Plus/Plus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || ||||||||||||| | || |||||| || || Sbjct 430165 ACTAAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTATCCAGTTAAA 430224 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||| || || ||||| | |||||||| ||||| || || |||||||||||||| Sbjct 430225 GAAGCGGAAAGATCAAATAAAAGACATAGACCTATTGGAATAGGAGTACAAGGATTAGCA 430284 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 ||| ||||||| | | || ||| | ||| ||||| |||||| |||||| | Sbjct 430285 GATACATTTATGCTTTTAAGATATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGA 430344 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCTATGACTGAATCTAATGAACTTGCTATTaaa 112820 | || || ||||| || |||| |||||| | ||| | || || || Sbjct 430345 AGAATATTTGAAACTATGTATTATGCTGCTTT------------AGAAATGTCTGTTGAA 430392 Query 112821 aaagcagaaaaatcaaagaaaaCTGATTTGAA--ATTTCCAGGAGCTTATGATAGTTTCG 112878 ||| || ||| || || |||| || || ||| |||| | Sbjct 430393 TTGGCACAA----GTAAGTGGAC-CATATGAATCATATCAAGG---------TAGTCCAG 430438 Query 112879 AAGGCTCACCTTTTTCACAGGGAAAATTCCAATTTGACCTTTGGGAT-CAACAGCCTCTT 112937 | || || |||| ||| |||||||| | ||| || ||| || | Sbjct 430439 CAAGC------------CAAGGAATATTACAATTTGATATGTGGAATGCAAAAG----TC 430482 Query 112938 GACAATGAACCAAAATAT---GATTGGAAAAATCTTAAAGATAGTGTTATG-AAACATGG 112993 || ||| |||||| |||||| | | ||||| | | || | |||||||| Sbjct 430483 GATAAT------AAATATTGGGATTGG-GATTTATTAAAAAAAAAAATAAGTAAACATGG 430535 Query 112994 AACTACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGG 113053 | | ||| ||||| || || ||||| ||||| |||||||| || | || ||| | || Sbjct 430536 ATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCGCAAATTTTAGG 430595 Query 113054 TAATAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGG 113113 |||||||||| || || ||| ||||||||| |||||| | |||||||| || || Sbjct 430596 AAATAATGAATCCTTTGAACCATATACAAGTAACATTTATTACAGACGTGTTTTAAGTGG 430655 Query 113114 TGAGTTTGTACTTTGTAATAAATATCTGCAAGAAGAACTTCTCGGAATCGGTAAATGGAA 113173 ||| ||| | || |||| || || | |||| ||| | | | ||| ||| | Sbjct 430656 TGAATTTTTTGTTGTTAATCCTCATTTGTTAAAAGATCTTTTTGATAGAGGTCTTTGGGA 430715 Query 113174 CAATGAAGTGAAAAACTCCATT-ATTGCTAATCAAGGTTCGGTTCAACATCTAA---AAT 113229 | || ||||| | | ||| ||||| || | || |||||| || | | || Sbjct 430716 TGAAGATATGAAACA-ACAATTAATTGCCCATAATGGAAGTGTTCAATATATTAGCGAAA 430774 Query 113230 TGCCTGATTGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAA 113289 | ||| | | ||||||| | | ||| || |||||||||| || ||| | | Sbjct 430775 TACCTAGTGACTTGAAAGAGTTGTATAAAACCGTTTGGGAAATCAAACAAAAAAATATTA 430834 Query 113290 TTGATATGGCTGCAGATCGTGG 113311 |||| |||||||| |||||||| Sbjct 430835 TTGACATGGCTGCTGATCGTGG 430856 >seq7 Length=1041357 Score = 111 bits (122), Expect = 4e-19 Identities = 274/406 (67%), Gaps = 21/406 (5%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||||||||||||||||||||| | |||||||| ||| | ||| ||||| Sbjct 912364 ACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACA 912305 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAA 59056 |||||||||| |||||||| || | | | || || |||||||| | | | | | Sbjct 912304 TTCCATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATA 912245 Query 59057 TGTTTTATTTGGTCAAATCCATTA---GTATATTCAGTATTGGCATCAATGTATTTATCT 59113 | ||||| || |||| || ||| |||| |||| || ||| | |||| | | Sbjct 912244 TTTTTTAACTGATCAACACCTTTATCTTTATAATCAGCATGCATATCTGTATATTCAGCA 912185 Query 59114 CCCCAATAACGCCATTGAAAACCATATACAGGTCC-AAG--AGTTCCTTCAGGAT--ATT 59168 || | | | ||||||||| || || | || || ||| | | |||| || | | Sbjct 912184 CCAAAGTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTAACTTCTCTATGAAAT 912125 Query 59169 CATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACCATCCCAAATATGAACAT 59228 |||| | | || | ||| |||||||| |||| | ||||| || || | Sbjct 912124 AATTT-----CCTATTATCTAAAAACTCTCTTGTCCCATTAGCTTCCCATATTCTTACGT 912070 Query 59229 TATTATCATTAAGAGATTTATT---ATCTGTTTTTCCAGATAGAAACCATAACAATTCCT 59285 | || || ||| | || |||| || ||||| ||| || |||||||| ||| || | Sbjct 912069 TTTTTTC--TAATA-ATGTATTTCCATTTGTTTCTCCCCTTATAAACCATAGCAACTCTT 912013 Query 59286 TAATG-CAAATTTTCCAAGCAACtttttttGTTGTAAGCATTGGAA 59330 |||| | | || ||| || |||||||||||| | | ||||| Sbjct 912012 CAATGATACCTCTTACAAATAA-TTTTTTTGTTGTTAATAATGGAA 911968 >seq13 Length=2459074 Score = 96.9 bits (106), Expect = 8e-15 Identities = 114/154 (74%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| |||||||| | ||| ||||| || ||| |||||||| ||| Sbjct 1710966 TTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTCATAAAGCTCGAGT---- 1710911 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| |||| || |||||||| || || Sbjct 1710910 TATGGATTATAAAACATTTCGCTTTAATGAATGTGTATGTAGTCCATATAATGCAGACTT 1710851 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||| |||||||||||| | |||||||||||| Sbjct 1710850 TGATGGGGATGAAATGAATTTACATGTACCTCAA 1710817 >seq8 Length=1320916 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 306249 ATAGAACATTACCATTATTTAGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATAT 306308 ||||| |||||||| |||| ||||||||| |||| ||| | | || || | | Sbjct 326041 ATAGATCATTACCACATTTTATTAAATTTGACTATGGACCAGAAAGTAGAGGGTTTGTGT 325982 Query 306309 CAAGTTC--ATTTAAACAAGGACTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGG 306366 ||| ||| |||||| ||| || | || ||| ||| |||||||| || | || Sbjct 325981 CAAATTCTTATTTAAGT--GGATTAACGCCACAAGAAGTCTTTTTTCATGCTATGGGAGG 325924 Query 306367 ACGTGACGGTGTTATTGATACTGCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAA 306426 | || ||| ||||||||||||||||||| ||| || | ||||||| | ||||||| Sbjct 325923 TAGAGAAGGTATTATTGATACTGCTTGTAAAACATCAGAAACTGGTTATATACAAAGAAG 325864 Query 306427 ATTAATGAAAACGCTTGAAGATATT 306451 |||||| ||| | | |||||| || Sbjct 325863 ATTAATTAAAGCTATGGAAGATGTT 325839 Score = 87.8 bits (96), Expect = 4e-12 Identities = 161/230 (70%), Gaps = 11/230 (5%) Strand=Plus/Minus Query 305264 AAACAATTCAGTAAAAT-GCTTGAA-ATTAATGATATTGTTATCAGACATTTGAATGACA 305321 ||| ||||||| ||| ||||||| || || ||| || |||||| ||| ||| Sbjct 327375 AAAAAATTCAGAAAAGGAGCTTGAATATGGAT-ATAAAGTAGAAAGACATATGACTGATG 327317 Query 305322 ATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATA 305381 | |||| | | || ||| | || |||||| | ||||||||| ||| |||| || | Sbjct 327316 AAGATTACATATTATTTAATCGACAGCCATCATTACATAAAATGAGTATTATGGGACACA 327257 Query 305382 AAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTA----CGCCT 305437 ||| ||| |||| || | || ||||| |||||| || ||| ||| | || Sbjct 327256 AAGCAAAAATATTGCCTTATTCTACCTTTCGTTTAAATTTA---GCT-GTAACATCACCA 327201 Query 305438 TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||||||| |||||||| || ||||||||||| | ||| || ||||||| Sbjct 327200 TATAATGCCGATTTTGACGGTGATGAAATGAACTTACATTTAGCTCAATC 327151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186806048518684