Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 seq14 84.2 2e-11 >seq2 Length=465170 Score = 96.9 bits (106), Expect = 3e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| ||||||||||||||||| || ||| ||||||||||| || ||||| |||| ||| Sbjct 462195 GCGGGCATGGTCTAGTGGTTATGACGCCTGCTTTACACGCAGGAGATCCCGAGTTCGATC 462254 Query 39838 CCCGGTGCCCGTATTT 39853 | |||||||||||||| Sbjct 462255 CTCGGTGCCCGTATTT 462270 >seq14 Length=2364342 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| || ||| | |||||||| || ||||| |||| ||| Sbjct 2348941 GCGGGCATGGTCTAGTGGCTATGACGCCTGCCTAACACGCAGGAGATCCCGAGTTCGATC 2349000 Query 39838 CCCGGTGCCCGTATTT 39853 | |||||||||||||| Sbjct 2349001 CTCGGTGCCCGTATTT 2349016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466122213007360