Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq6 122 7e-23 seq11 96.9 3e-15 >seq6 Length=837512 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || |||||||| || || || || ||||| | || ||||| Sbjct 386722 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 386781 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| |||||| || |||||||| | || ||||||| Sbjct 386782 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 386841 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| || || |||||||||||||| || ||| | || || ||| Sbjct 386842 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 386901 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| |||||||||| || || ||| ||||||| Sbjct 386902 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 386948 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| || || || || || ||||| | || ||||| Sbjct 386266 ATGCAAATCTTTGTAAAAACTTTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCT 386325 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| |||||| || |||||||| | || ||||||| Sbjct 386326 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 386385 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| || || ||||||||||| ||| | ||| | ||||||||| Sbjct 386386 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 386445 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| |||| ||||| || || ||| ||||||| Sbjct 386446 ATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGG 386492 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || ||||| || || || || || || || | || || || Sbjct 386494 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 386553 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| || |||||||| | || ||||||| Sbjct 386554 GATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 386613 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || ||||||||||||||| || ||| | || |||||| Sbjct 386614 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 386673 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || |||| ||||| || || ||| ||||||| Sbjct 386674 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 386720 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 106344 AAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAA 106403 |||||| || |||||||| | || |||||||||||| | |||| ||| || || Sbjct 386122 AAAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAG 386181 Query 106404 CAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACAT 106463 ||||||||||| || ||| | || || ||||| |||||||||||||| ||||| Sbjct 386182 CAATTAGAAGACGGTAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACAT 386241 Query 106464 TTAGTATTGAGGTTACGAGGAGG 106486 ||||| || || ||| ||||||| Sbjct 386242 TTAGTTTTAAGATTAAGAGGAGG 386264 >seq11 Length=1651515 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 106252 GTTTA--AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC 106309 ||||| ||||||||||| ||||| |||||||| || || || || || || | || Sbjct 1491097 GTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGT 1491038 Query 106310 AGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCC 106369 ||||| ||| | ||| | || ||| |||||| || |||||||| | || Sbjct 1491037 TGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCC 1490978 Query 106370 CGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGG 106429 | |||||||||||| | |||| || || ||||||||||||||| | ||| | Sbjct 1490977 CCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATC 1490918 Query 106430 CGATTACAACATACAAAAAGAATCTACACTACATTTAGTA 106469 || || ||||| |||||||| || || ||||||| ||| Sbjct 1490917 TGACTATAACATTCAAAAAGAGTCAACCTTACATTTGGTA 1490878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402327422893952