Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 477 1e-129 seq10 241 2e-58 >seq6 Length=837512 Score = 477 bits (528), Expect = 1e-129 Identities = 1148/1715 (67%), Gaps = 34/1715 (2%) Strand=Plus/Minus Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || || |||||| || | ||| || ||||| | |||||| | ||||| |||||| Sbjct 430871 TGGTCAATGAAAATACCACGATCAGCAGCCATGTCAATAATATTTTTTTGTTTGATTTCC 430812 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG---GCTCGTATTTTGAATGGAT 68631 |||| || ||| | | || ||| | ||| || | ||| ||| ||||| | Sbjct 430811 CAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTTCGCTAATATATTGAACACTT 430752 Query 68632 CCACCATCGGATAT-AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 ||| || || || |||| | | || || || |||| ||| | ||| || | Sbjct 430751 CCATTATGGGCAATTAATTGTTGT-TTCATATCTTCATCCCAAAGACCTCTATCAAAAAG 430693 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | || | | | ||| |||||||| | |||||| ||| ||| || ||| |||| Sbjct 430692 ATCTTTTAACAAATGAGGATTAACAACAAAAAATTCACCACTTAAAAC---ACGTCTGTA 430636 Query 68751 A---ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 | || ||||| ||||||||||| | |||||||||||||| | |||||| | ||||| Sbjct 430635 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGA 430576 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 || |||||||||||||| | | | | |||||| | |||||| | | ||||| | Sbjct 430575 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTT 430516 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAG-ATGG--TACAACATTCCAAAGATCGTATTG 68924 ||||| | |||||||||| | | || | | ||||||| | ||| |||| Sbjct 430515 TTTTAATAAATCCCAATCCCAATATTTATTATCGACTTTTGCATTCCACATATCAAATTG 430456 Query 68925 TAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCC--TTCCTGTTCA 68982 || ||||| | ||||| || | ||||| |||||| ||||| || || | Sbjct 430455 TAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT-- 430398 Query 68983 GCTAGTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTA 69039 || | |||| || || | ||||| ||| | ||||| || ||||| || || ||||| | Sbjct 430397 GCCAATTCAACAGACATT--TCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-A 430341 Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099 || | |||| |||||| | || ||||||| |||||| ||||||| |||||| Sbjct 430340 TTTAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCT 430281 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 ||||| || || || || || |||||||||||||| |||||||| ||||| |||||| | Sbjct 430280 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 430221 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219 | ||||||||||| | || |||||||||| | ||||| | || || ||| | | Sbjct 430220 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAAT 430162 Query 69220 -TCCTTTAGTTTGAGAAAATCAAATCGTCCAT-----CTAT-AACAAACATATTCAGTGC 69272 || | || ||| ||||| |||| | | |||| |||||| | | ||| Sbjct 430161 ATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGC 430102 Query 69273 TACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGT 69332 | || |||| ||||||||| ||||| |||| || || ||||| || || || Sbjct 430101 AATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACA 430042 Query 69333 ACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGC 69392 ||||| |||||| ||||| || || || | ||||| ||||| || ||||| || Sbjct 430041 ACATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGC 429982 Query 69393 GTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 || || || | ||| | || ||||||||| || || || | |||| ||| Sbjct 429981 ATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCA 429922 Query 69453 AACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAG 69512 | | ||| ||| | || | | || |||| ||| |||| |||||||| Sbjct 429921 TAAATCTTGTGCAAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAA 429862 Query 69513 CCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAA 69572 ||| ||||| || ||||| ||| || || ||||||||||| || ||||| || Sbjct 429861 TTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAA 429802 Query 69573 TGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT 69632 | ||| | || ||||| |||| ||||||||||| ||| || | ||||| ||| Sbjct 429801 AGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 429742 Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 ||| | ||| | | ||| |||||| || || ||||||| | | ||| | ||| || Sbjct 429741 AAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 429682 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 | |||||| |||||||||||||| | ||||| || | || || ||| ||| Sbjct 429681 AAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCC 429622 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATT 69812 || ||||||| ||||| || || | |||| | ||||| | |||||| | | |||||| Sbjct 429621 ACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATT 429562 Query 69813 AGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAG 69872 ||| ||||||| ||||| || ||| | || | ||||| | || | Sbjct 429561 TGATATACCATTAGTTCCTCTGATGTAAGAATTTTGAGCTCTAATATCTTGTACAGCCAC 429502 Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 |||||| |||||||| ||||| || | ||||| | || ||||| ||| ||||||| Sbjct 429501 ACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACC 429442 Query 69933 CTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAG 69991 ||||| |||| | ||| || ||| || ||| || ||||||||| | | | Sbjct 429441 TTCTATTGAATCAGATTTCATTGATAATAA-AAAGCATGAAGACATTTGGGGTCTTGGTG 429383 Query 69992 TTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGT 70051 |||||| ||||||||||||||||| || ||||| || |||||| || | | || | Sbjct 429382 TTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGAT 429323 Query 70052 ATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACA 70111 | ||||| | ||| ||| | ||| ||| |||||||| | || | ||| || | Sbjct 429322 AAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATA 429263 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 ||||||||| ||||| | |||||||||| || || | ||| || |||| | | Sbjct 429262 AATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATG 429203 Query 70172 TTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTT 70206 ||||||| |||||||| | ||| ||| |||||| Sbjct 429202 TTTTAAATCCAAAATAATCGTAATTAAAATCTCTT 429168 >seq10 Length=1559237 Score = 241 bits (266), Expect = 2e-58 Identities = 612/919 (67%), Gaps = 23/919 (3%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAA--TGATTATCTTCTT-GTGACATAACTCCCATTTT 39327 |||||| ||| | ||||||||| | || | ||||| | | |||||| || ||| Sbjct 1415855 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTT 1415796 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||| || || |||| | || || || ||||| ||||| |||| || ||||| || Sbjct 1415795 TTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTC 1415736 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAA---TTCTGAAAT 39444 ||| || ||| ||||| ||| || | ||| | ||||| |||| ||| Sbjct 1415735 CATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCT--AAT 1415678 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 |||| ||| ||||||||||| |||||| ||| | | |||||||||| || | Sbjct 1415677 -AATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATTAA 1415619 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | | |||| || || | ||| | |||| | || || || ||| | | ||| Sbjct 1415618 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1415559 Query 39565 CGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || || || ||||| || | | || ||| || | ||||| || Sbjct 1415558 --ATTTTGAACAACCTCTTCTGGCAATTTATTTTCTAACAAGCTATAAATTAAACAATTA 1415501 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || |||| || |||||||||||||| ||||| ||| |||||| | ||| | Sbjct 1415500 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 1415441 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 | | | | ||||| | ||||||||| ||| |||| |||| ||| || || ||| Sbjct 1415440 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1415381 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATCCAC 39799 || || |||| || |||| ||| || | || | ||||| || |||||| Sbjct 1415380 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTT---TATCCAT 1415324 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 || |||||| ||||| || |||| || || |||| ||||||| ||| | | Sbjct 1415323 TTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAA 1415264 Query 39860 T--AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 | ||| | | | || | ||| ||| ||| |||| ||||| | |||||| |||| | Sbjct 1415263 TTTAATCTCTCTT-TCTC-ATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAG 1415206 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 | || || ||||||| || || ||||| | ||||| | | |||||| | ||||||| Sbjct 1415205 AGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTA 1415146 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 | ||| ||||| | || |||||||| ||||||||||||||||| ||||||| Sbjct 1415145 CTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAA 1415086 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGA 40097 |||| | |||||||| ||||||| |||||||| | ||||| | |||| || | Sbjct 1415085 ATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCA 1415026 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157 ||| |||||| ||||| ||||||||| |||||||| || ||||| || ||||| || | Sbjct 1415025 AATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAA 1414966 Query 40158 TGTTCCATATATCACGATA 40176 ||||||| ||| |||| Sbjct 1414965 AATTCCATACTTCAGGATA 1414947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904987656160