Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4 197 1e-45 seq10 170 2e-37 seq7 150 1e-31 >seq4 Length=712013 Score = 197 bits (218), Expect = 1e-45 Identities = 385/569 (68%), Gaps = 15/569 (3%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTT 19416 ||||| || || ||| |||||||||||||| || ||| || | ||||| ||| | Sbjct 69597 TATGGTCCTCCTGGTACCGGAAAAACATTAATAGCTAGACAAATAGGTAAAACATTAAAT 69538 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 ||| | |||| |||||| | ||||| |||||||| |||||||| || ||||||||| Sbjct 69537 GCAAGAGAACCG---AAAATTATCAATGGGCCTGAAATATTAAATAAGTACGTAGGTCAA 69481 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 || ||||||||| | || || ||| || |||||| || | |||| | || Sbjct 69480 TCTGAAGAAAATATTCGTAACTTATTTAAAGAGGCTGAATTGGAGTATAAACAATCTGGA 69421 Query 19537 CGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596 || | || || ||||| ||| ||||||| | || ||||| ||| |||||| Sbjct 69420 GAGAATTCATTATTACATATTATTATATTAGATGAGATAGATGCAATTTGTCGACAAAGA 69361 Query 19597 GGT---------TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCA 19647 ||| ||| ||| | || ||| |||| | | | || |||||| | | ||| Sbjct 69360 GGTAGTGCTGCATCTAGTGGATCAGGTGTAAATGATAGTATAGTTAATCAATTATTATCA 69301 Query 19648 AAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTG 19707 ||| |||| || || || | |||||||| || | ||||| ||||| |||||| | Sbjct 69300 AAAATAGATGGAGTAAATAGTTTAAATAATATACTATTAATTGGTATGACAAATAGAATA 69241 Query 19708 GAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAAC 19767 || ||||| || || || ||| |||| ||||| || ||| || | || ||||| Sbjct 69240 GATTTAATCGATGAAGCATTGTTAAGACCAGGTCGATTTGAATTACATATTGAAATATCA 69181 Query 19768 TTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAA 19827 |||||| || || || || | |||| ||||| || |||||| || ||| |||| Sbjct 69180 TTACCCAATAAAGAAGGTCGGATTCAAATATTAAATATTCATACAAAAAATATGAGACAG 69121 Query 19828 AATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTAT 19887 ||||| |||||| | ||||| || |||||||| | |||| ||| || | | Sbjct 69120 AATAATAAATTAAATAAAGATGTTAATATAGAAGAATTAGCAGAAAGAACCCCCAATTTT 69061 Query 19888 AGCGGCGCAGAACTTGAGGGATTAGTGAG 19916 || |||||| |||| |||||||| || Sbjct 69060 TCAGGTGCAGAAATTGAAGGATTAGTAAG 69032 >seq10 Length=1559237 Score = 170 bits (188), Expect = 2e-37 Identities = 562/862 (65%), Gaps = 25/862 (3%) Strand=Plus/Plus Query 43721 TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAA 43780 |||| ||| ||||| | | || |||||||| |||| ||||||||||| || |||||| Sbjct 1414947 TATCCTGAAGTATGGAATTTTTATAAAAAAGCTGAGGCCTCATTTTGGACTGCTGAAGAA 1415006 Query 43781 GTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATT 43838 | ||||| | | || || | || ||| | |||||| | | |||||||||| Sbjct 1415007 ATAGATTTATCAAGTGATTTGAAAGACTTTGAAAA--ATTAAATGTAAATGAAAAACATT 1415064 Query 43839 TTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG 43898 ||||| || | || |||||||| || || || || ||||| |||||||| | Sbjct 1415065 TTATAAAACATGTGCTAGCATTTTTTGCAGCTAGTGATGGAATAGTATTAGAAAATTTAG 1415124 Query 43899 TTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAA 43958 |||| ||| |||||| ||| || ||||| | ||||||| ||||||| Sbjct 1415125 CTAGTAAATTTTTAAGAGAAGTACAAATAATTGAAGCCAAAAAGTTTTATGCTTTTCAAA 1415184 Query 43959 TTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAG 44018 | || | |||||||| || || |||| || ||| | | || |||| || || | | Sbjct 1415185 TAGCTGTTGAAAATATACACTCTGAAACCTATAGTTTATTAATTGATAATTATATTAGGG 1415244 Query 44019 ATGGGCACGAGAAGCATCGATTG-TTTAATGCGATAGAAACAGTACCTGCGATTAAACAT 44077 ||| | | |||| | | ||| ||| |||| || |||| |||| || || ||| || Sbjct 1415245 ATGAGAAAGAGA-GATTAAATTTATTTCATGCTATTGAAAATATACCAGCAATAAAAAAT 1415303 Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTC 44137 |||||| ||||| |||||||||||| | | ||||||| ||| || |||| Sbjct 1415304 AAAGCATTATGGGCAGCTAAATGGATAAACGATACGAACTCTTTTGCTGAAAGAATTGTA 1415363 Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTA 44197 || |||| ||| ||||| || || ||| ||| ||| || ||||||||||| Sbjct 1415364 GCTAATGCATGTGTCGAAGGAATATTATTTAGTGGAAGTTTTTGTGCAATATTTTGGTTT 1415423 Query 44198 AAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAA 44257 || |||| | | | | ||| || || ||| ||||| || || ||| | |||||| Sbjct 1415424 AAAAAACAAAATAAATTACATGGTTTAACATTTAGTAATGAATTGATTAGTAGAGATGAA 1415483 Query 44258 GGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAG-GAGACGATAAGCCTTC 44316 || ||||| |||||| ||| ||| || ||| || | ||| |||| | Sbjct 1415484 GGATTACACACAGATTTTAATTG---TTTAATT-TATAGCTTGTTAGAAAATAAATTGCC 1415539 Query 44317 ATGTAAGACAATTACAGATATTGTTGTAGAGGCAGT--AA--AGATAGAACAAGAATTTA 44372 | || || | |||| ||| ||| ||||| || ||| ||| || |||| Sbjct 1415540 AGAAGAGGTTGTTCAAAATATAGTTAAAGAAGCAGTTGAAGTAGAAAGATCATTTATTTG 1415599 Query 44373 TGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATA 44432 ||| | | |||||| ||||||| ||||||||| | | ||| ||||| | Sbjct 1415600 TGA----ATCTTTACCTTGTGATTTAATTGGAATGAATTCAAGACTTATGTCTCAATACA 1415655 Query 44433 TTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGCGATAAACACTATATTG 44489 |||||| |||| ||||| ||| || ||| | |||||| ||| | | Sbjct 1415656 TTGAATTTGTTGCTGATCGATTA---TTAGAATGTTTAGGTTGCTCCAAAGTTTTCCATT 1415712 Query 44490 TACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTG 44549 | |||| || ||| || ||||| || || || |||| |||||||| || |||| Sbjct 1415713 CAAAAAATCCATTTAGTTGGATGGACTTAATATCTTTACAAGGAAAAACAAATTTCTTTG 1415772 Query 44550 AAAAACGCGTTGGAGAATATCA 44571 |||| | |||| ||| ||||| Sbjct 1415773 AAAAGAGAGTTGCAGATTATCA 1415794 >seq7 Length=1041357 Score = 150 bits (166), Expect = 1e-31 Identities = 271/391 (69%), Gaps = 4/391 (1%) Strand=Plus/Plus Query 40875 GGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC-TATGTACTC 40933 ||||| |||| |||||||| | | | || ||||| || ||||| ||| |||| | | Sbjct 912150 GGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATAT-ACAGATATGCATGC 912208 Query 40934 TGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGA 40993 |||||||| ||||||| | ||||| ||| | ||||| || |||||| ||| Sbjct 912209 TGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATTTAATTAAAAACGA 912268 Query 40994 TCCCGATA-GCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 ||| || | | |||| || || || || || ||||| || || || || |||| Sbjct 912269 TCC-GACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATTTAGATCAAATGG 912327 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 |||| || ||||||||| | |||||||| ||||| |||| |||| || | |||||| Sbjct 912328 CATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTATCATGTA 912387 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATG 41172 ||||||||||||| |||| | || || || || || || || || || ||| Sbjct 912388 TTATGTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAATATTGCTTCCTATT 912447 Query 41173 CTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACA 41232 || | | || |||||||| ||||| || |||||| |||| | ||||||| | || Sbjct 912448 CTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAATTTATACATG 912507 Query 41233 CGTTAGGAGATGGACATATTTACATTAATCA 41263 || ||| ||| ||| |||| | |||||| Sbjct 912508 TATTGGGAAATGCTCATGTTTATAATAATCA 912538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453849266220