Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 132 4e-26 seq11 104 2e-17 >seq6 Length=837512 Score = 132 bits (146), Expect = 4e-26 Identities = 796/1251 (64%), Gaps = 50/1251 (4%) Strand=Plus/Minus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 || ||||| ||| || | || ||||||||||| | || |||| | ||| || ||| Sbjct 430871 TGGTCAATGAAAATACCACGATCAGCAGCCATGTCAATAATATTTTTTTGTTTGATTTCC 430812 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGC-AATCGATTGAACGCT 130674 ||| |||| || || | || | | || | ||||| ||| ||| ||||||| || Sbjct 430811 CAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTT-CGCTAATATATTGAACACT 430753 Query 130675 ACCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCTGTACAA 130733 || || | ||| || | || |||| |||| || ||| | | || | | || Sbjct 430752 TCCATTATGGGCAATTAATT-GTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAAAA 430694 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 ||||||||| ||||||| ||||| | ||| |||||| | || ||||| | Sbjct 430693 GATCTTTTAACAAATGAGGATTAACAACAAAAAATTCACCACTTAAAACACGTCTGTAAT 430634 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 ||||||| || || | |||||||||||||| || || || || ||||| | || | | Sbjct 430633 AAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAAG 430574 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCT 130913 | || ||||| ||| | | |||||||| | | || || | | |||||| | Sbjct 430573 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTT 430514 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---GTTCCACATATCAAATT 130970 | ||| |||||||||||| | | || | ||| || |||||||||||||||| Sbjct 430513 TTAATAAATCCCAATCCCA---ATATTTATTATCGACTTTTGCATTCCACATATCAAATT 430457 Query 130971 GTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAG 131030 ||| ||| |||| || || ||||| || | ||||| || ||| || | | Sbjct 430456 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 430397 Query 131031 CCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTA 131090 ||| || ||| ||||| | ||||| || ||||| ||| | |||||| Sbjct 430396 CCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTA 430337 Query 131091 ATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGAC 131150 ||| ||| |||| | || || ||| || | | | ||||| | ||||| | | Sbjct 430336 ATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATC 430277 Query 131151 CCTGTATCCCAACGCCCACCGGTCTATG--TTTTAAATTACATTTACGCGAACATTCGGT 131208 | |||| || | || | |||||||| ||||| | | ||| ||| | || | Sbjct 430276 CTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGC-TTCTTTAACT 430218 Query 131209 GGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCT 131268 |||||| || | ||||| ||||| | |||||| | | ||||| || | Sbjct 430217 -GGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 430159 Query 131269 TTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAA-TTGATTTACACATA 131327 | ||||| | |||| ||| |||| | ||||| ||| | | || | Sbjct 430158 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA-A 430100 Query 131328 TTGACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGGC 131385 | || || | ||||||||| || ||| ||| | || ||| | || |||||| Sbjct 430099 TGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGAT--GTATATTCAATAATTTCACA 430042 Query 131386 GCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG 131445 || |||||||||| || || || || ||||||| |||||| ||||| ||| ||||| Sbjct 430041 ACATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATT-ACATG 429983 Query 131446 -GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA 131504 || || || | ||| || || || ||||| | ||| ||| |||| || | || Sbjct 429982 CATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTT--GTAATATAGCAAA 429925 Query 131505 --AGAGTTTTCGAGCAGACAATTGATATTTGT-----ATTGGCCGCGTTTTTCGTAATTT 131557 | | | | | ||| | ||||| | ||| | ||| | || |||||| ||| Sbjct 429924 CCATAAATCTTGTGCA-AGAATTGTTTTTTTTCCAAGATTTTC----TTCTTCGTATTTT 429870 Query 131558 TCGTACAACGTTTCAAAGTTTTGGCCAAACG---AACTGTCCAAATTGGGACATTCGCTG 131614 || || ||||||| | || || | | ||| || |||||||| | Sbjct 429869 GTATATAATTTTTCAAATTCTTCACCCCAGGTTTCACT---TAAGCCTGGACATTCATTA 429813 Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTC---AACTCGCTTCATAAACAAATCCGGC 131671 || ||||||| | ||| | || | ||| |||| |||||||| ||||| || Sbjct 429812 GGGCACATTAAAGTCCA---GTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGT 429756 Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-t 131730 ||||| | || || || | ||| | |||| | |||||| || |||| ||||||| | Sbjct 429755 ACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTA-CCATGATTTTTTCT 429697 Query 131731 CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 |||| |||||| || ||||| || | |||||| ||||| | ||| || || Sbjct 429696 TAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGC 429646 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || |||||||| ||||| ||||||||||| || ||||| | | ||||| | |||| Sbjct 386933 AAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGTT-CTACCGTC 386875 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || ||| |||| | | |||||||| || || | ||| |||||||| Sbjct 386874 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATC 386815 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || ||| ||| | | |||| | ||| |||| | |||||| || ||||| || | Sbjct 386814 TTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGT 386755 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | ||||| || || ||||||||| || || Sbjct 386754 TTTTCCGGTTAATGTTTTTACGAAAATTTGCATACCTCCT 386715 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || || ||||| ||||| ||||||||||| ||||| || | | |||| | | || Sbjct 386477 AAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTC-CATC 386419 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 || | ||||| || ||| |||| | | |||||||| || || | ||| |||||||| Sbjct 386418 CTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATC 386359 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | |||| | ||| || | | |||||| || ||||| || | Sbjct 386358 TTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGT 386299 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | |||||| ||||||||||||||| || || Sbjct 386298 TTTTCCGGTTAAAGTTTTTACAAAGATTTGCATACCTCCT 386259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || || ||||| || || ||||||||||| |||||||| | | |||| | | || Sbjct 386705 AAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTT-CTACCATC 386647 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| ||||| |||| | | |||||||| || || | ||| |||||||| Sbjct 386646 TTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATC 386587 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAG 27213 || || ||| | |||| | || || | |||| ||||| || ||||| || | Sbjct 386586 TTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGC-TCAACATCAAGAGTGATTG 386528 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | |||||| || || || |||||| || || Sbjct 386527 TTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATACCTCCT 386487 >seq11 Length=1651515 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||||||||| || || ||||||||||| || ||||| | | ||||| | | |||| Sbjct 1490878 TACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTC-CATCTT 1490936 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | ||||| || ||| |||| | | |||||||| || || | || |||||||| Sbjct 1490937 CTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTT 1490996 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||| || ||| | |||| | || || | | |||||| || ||||| || | || Sbjct 1490997 GGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 1491056 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| |||||||||||||| Sbjct 1491057 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1491087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932100573728