Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 116 5e-21 >seq6 Length=837512 Score = 116 bits (128), Expect = 5e-21 Identities = 416/639 (65%), Gaps = 11/639 (2%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || ||||| |||| |||||||||||| |||||||||| || || ||||| | || || Sbjct 430634 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAA 430575 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-TCTCCTTGATGCGTTC 110826 ||||||||||| ||||| | | |||| || | | || | | | ||| | || Sbjct 430574 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTT 430515 Query 110827 CTTGAGAACATCCCAGTCG---TAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 || | || |||||| || || || | | || | | |||||| ||||| || Sbjct 430514 TTTAATAA-ATCCCAATCCCAATATTTATTATCGACTTTTGCATTCCACATATCAAATTG 430456 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 | | |||||| || ||| ||| | | | | |||||| | || ||| || Sbjct 430455 TAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTGC 430396 Query 110944 CAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||||||| ||| | || | | || | |||||| |||||||| || | ||| | Sbjct 430395 CAATTCAACAGA-CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTA 430337 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 || || ||||| || || ||| ||| || | | | |||||| ||| || | | Sbjct 430336 ATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATC 430277 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACG 111121 |||| || || | ||||||||||| |||| |||| || ||||| ||| | ||| Sbjct 430276 CTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTC-CGCTTCTTTAACT 430218 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 |||||| ||||||| ||||| | | | || |||| | |||| ||| || || || ||| Sbjct 430217 GGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCA 430158 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGCGAT 111240 | | ||||| | ||| ||| | ||| || ||| | |||| | | || || Sbjct 430157 TATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACA-AATTTGCATAATGCAAT 430099 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || || ||||| |||||||| ||||| ||| || || | |||||| ||| Sbjct 430098 GGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACA 430039 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 ||| || | ||||| || || ||||| ||||| || Sbjct 430038 TAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATT 430000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028514422400