Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 129 7e-25 >seq6 Length=837512 Score = 129 bits (142), Expect = 7e-25 Identities = 809/1289 (63%), Gaps = 14/1289 (1%) Strand=Plus/Plus Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 ||| || || || || | || ||| | || |||||||||||||||||||| ||||| Sbjct 429351 TCATGCTACTCCTACATTATTTAATTCGGGAACACCAAGACCCCAAATGTCTTCATGCTT 429410 Query 104380 CCTTATCGCCAAC-AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTG 104438 |||| ||| || || ||||| | ||||| | || ||| | | | | |||| Sbjct 429411 T-TTATTATCAATGAAATCTGATTCAATAGAAGGTATATTTGAAACATTAAAGCAATGTG 429469 Query 104439 CGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA 104498 | || || || || ||||| || || | || ||| | ||||| | | Sbjct 429470 CATTGATTAGTAAAACAGCAGGAGGTATAGGTGTGGCTGTACAAGATATTAGAGCTCAAA 429529 Query 104499 AATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTAT 104558 | ||| || | || || |||||| |||| ||||| | | || ||| | | || | Sbjct 429530 ATTCTTACATCAGAGGAACTAATGGTATATCAAATGGTTTAGTCCCGATGTTAAGAGTTT 429589 Query 104559 TTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAG 104615 |||| | ||||| | |||||| |||||| ||| | |||| || ||| | || | Sbjct 429590 TTAATGATACAGCAAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGTTCTTTTGCTG 429649 Query 104616 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 104675 | ||| |||| |||||||| | ||||| | || || | || || | || || | Sbjct 429650 TATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATG 429709 Query 104676 GTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 104735 || | || || | | || ||| | || | ||| | ||| | || ||| | || | Sbjct 429710 GTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGGTACCTGATTTATTTA 429769 Query 104736 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTC 104795 |||| ||||| |||| | | || ||| || | | || || | | || || Sbjct 429770 TGAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGTGCCCTAATGAATGTCCAGGCT 429829 Query 104796 TCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC 104855 | || || |||||| || |||||| | || ||||| ||||| |||||| || Sbjct 429830 TAAGTGAAACCTGGGGTGAAGAATTTGAAAAATTATATACAAAATACGAAGAAGAAAATC 429889 Query 104856 GGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT-CAAGTCTCAAACC 104914 | | || | | || ||| | ||| ||||| | ||| | |||| Sbjct 429890 TTGGAAAAAAAACAATTCTTGCACAAGATTTATGGTTTGCTATATTACAAAGC-CAAATA 429948 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAAC-CAAAAGAGTAATCAAAA 104973 || |||||| |||||| ||| | || ||||| || ||||| | ||| | |||||||| Sbjct 429949 GAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCG-AATCAAAA 430007 Query 104974 GAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAA 105033 ||||| || || || | ||| | ||| ||||| | |||| |||| Sbjct 430008 AAATTTAGGAACAATTAAATGCAGTAATTTATGTTGTGAAATTATTGAATATACATCACC 430067 Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093 ||||| ||||| ||||| | || || || || | ||| | ||| ||| ||| Sbjct 430068 TGATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCATTATGCAAATTTGTTGATAGAGA 430127 Query 105094 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCT 105153 | ||| |||| ||| | ||||| | | || |||| |||| | | || | ||| | Sbjct 430128 AAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTT 430187 Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 105213 | | | | ||||||| ||||||| ||| || ||| | || | ||| |||| || Sbjct 430188 AGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAGCGGAAAGATCAAATAAAAG 430247 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCA 105273 ||| | || ||||| | || || || || | || ||| ||| || |||| | | Sbjct 430248 ACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGATA 430307 Query 105274 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 ||| ||| || || ||||| || ||| | ||| | |||||||| || |||||| | Sbjct 430308 TCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATTA 430367 Query 105334 CGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393 || ||| | || | | || |||||| | || ||| ||||||||| | | | | Sbjct 430368 TGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTGGACCATATGAATCATATCA 430427 Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT 105453 ||| |||||| ||||| | | ||||||||||||||| | | | | | Sbjct 430428 AGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGTGGAATGCAAAAGTCGATAA 430487 Query 105454 TCACTA---CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGA-AGGGTCTTCGTAACA 105509 | | || || |||| | | | || || | ||| | | | || | | || Sbjct 430488 TAAATATTGGGATTGGG-ATTTATTAAAAAAAAAAATAAGTAAACATGGATTAAGAAATT 430546 Query 105510 GTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 105569 ||| || | || || ||||||||||| || || | ||||| || || |||||||||| Sbjct 430547 CTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCGCAAATTTTAGGAAATAATGAAT 430606 Query 105570 GCTTTGAACCCTACACGACGAACATCTAT 105598 ||||||||| || || | ||||| ||| Sbjct 430607 CCTTTGAACCATATACAAGTAACATTTAT 430635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257562902560