Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq10 107 9e-19 >seq10 Length=1559237 Score = 107 bits (118), Expect = 9e-19 Identities = 185/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 65117 AAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAA 65176 ||||| |||||||||||||| | ||| | || ||||| ||||| | | | ||| Sbjct 468256 AAATTTATATTGTTTGAACCGACAAATGTTTGCGCCATATTTATAATAGTTTGTTGTAAT 468197 Query 65177 CTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACT 65236 | |||||| ||||||||| | |||||| | | ||| ||| || ||||| ||| Sbjct 468196 GATGATTCACCATGATGATATGCACTATGTTCTGCAATATAACCAACAAGCTGAGCGACT 468137 Query 65237 TTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATT 65296 || ||| || ||||||| ||||||| | ||| || | ||| | | | | Sbjct 468136 TTACATTCATTTCTTAAATTTCTTTTAAAGCAACCATATAAAACTTTTCTTTGTCCTGGT 468077 Query 65297 TTCAATCCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATG 65356 ||| |||||||||| | ||| || || ||||| || ||||||| | || ||| ||| Sbjct 468076 TTCCATCCATCCATAATATTTGGTATACTTCTTTCTGTATCATATCTAGAATAATATATT 468017 Query 65357 AATTCTTTGTTAATAAATTCTTCATATGA 65385 |||||||| || | ||| || | |||||| Sbjct 468016 AATTCTTTATTTACAAAATCATAATATGA 467988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235678724676600