Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq11 118 1e-21 >seq6 Length=837512 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || | ||||| || || || |||||||| |||||| || | Sbjct 386494 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 386553 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || ||||||||||| || || || || |||||||| || || Sbjct 386554 GATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 386613 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||||||||| || || ||| | || |||| | | || ||| | ||||| || Sbjct 386614 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 386673 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||| ||||| ||| | || |||| || Sbjct 386674 ATTCAAAAAGAATCGACTTTACACTTAGTTTT 386705 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || | ||||| || || ||||||||||| ||||| || | Sbjct 386266 ATGCAAATCTTTGTAAAAACTTTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCT 386325 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||||||||| || || || || ||||| || || || Sbjct 386326 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 386385 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||||| ||||| || ||| | ||||||| | || ||| | || || || Sbjct 386386 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 386445 Query 27586 GTCCAAAAGGAATCCAC 27602 | ||||| ||||| || Sbjct 386446 ATTCAAAAAGAATCTAC 386462 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || ||||| || ||||| |||||| || |||| ||||| |||| | || |||||| Sbjct 386065 GGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCTAAA 386124 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| || || || || || || || || || || | ||||||||||||| |||||| Sbjct 386125 ATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAGCAA 386184 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 | || || | | | || || | |||||||| | ||||| ||||| || | ||| || Sbjct 386185 TTAGAAGACGGTAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACATTTA 386244 Query 27613 GTCTT 27617 || || Sbjct 386245 GTTTT 386249 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | ||||| || || ||||||||||| ||||| || Sbjct 386722 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 386781 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || || |||||||| || || || || || || || || || Sbjct 386782 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 386841 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||||| ||||| || ||| | || || | | | || || | |||||||| Sbjct 386842 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 386901 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||| ||||| || | ||| |||| || Sbjct 386902 ATTCAAAAAGAATCTACCTTACATTTAGTTTT 386933 >seq11 Length=1651515 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27398 TTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTG 27457 |||| | ||||||||||||||| || || | ||||| || || || |||||||| |||| Sbjct 1491095 TTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTG 1491036 Query 27458 AGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTC 27517 | || ||||| |||| |||| | || || ||||| || || || || |||||||| | Sbjct 1491035 AACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCC 1490976 Query 27518 CAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAG 27577 | || || || | ||||||| ||||| || ||| | || |||| | || || | | Sbjct 1490975 CTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTG 1490916 Query 27578 ACTATAATGTCCAAAAGGAATCCAC 27602 ||||||| | ||||| || || || Sbjct 1490915 ACTATAACATTCAAAAAGAGTCAAC 1490891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307234777280