Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 6e-16 seq6 96.9 2e-15 >seq11 Length=1651515 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | || ||| |||||||||||||| || || | ||||| | ||||| Sbjct 1490879 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1490938 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| || || || ||||| | ||||| || || || | ||| || || ||| | Sbjct 1490939 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1490998 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||||| |||||| | |||||| || || || || | || || ||||| Sbjct 1490999 AT-TTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1491057 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||||||| ||||| ||||| || ||||| || Sbjct 1491058 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1491090 >seq6 Length=837512 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||||||||| || || || ||||||| | ||||| | |||||| |||||||| Sbjct 386684 TCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAA 386625 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 ||||| | ||||| || || || | || || || ||| ||| ||| | |||||| Sbjct 386624 ATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCT-TGAATTTTAGCTTTAACATT 386566 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || || ||| || || | || || ||||| |||||||| ||||| || Sbjct 386565 TTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTAC 386506 Query 34695 AAAAATCTGCAT 34706 ||||||||||| Sbjct 386505 GAAAATCTGCAT 386494 Score = 91.5 bits (100), Expect = 9e-14 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || |||||||||||||| || || | ||||| ||||||| | |||||| || || || Sbjct 386912 TCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAA 386853 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-A 34634 ||||| | ||||| || || || | || || || ||| ||| ||| | ||||||| Sbjct 386852 ATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCT-TGAATTTTGGCTTTAACGTT 386794 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || ||| || || || | || || ||||| |||||||| ||||| || Sbjct 386793 TTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTAC 386734 Query 34695 AAAAATCTGCAT 34706 ||||| ||||| Sbjct 386733 GAAAATTTGCAT 386722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727896919452