Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 6e-13 >seq13 Length=2459074 Score = 89.7 bits (98), Expect = 6e-13 Identities = 268/406 (66%), Gaps = 17/406 (4%) Strand=Plus/Minus Query 136368 AAACTGGCAACATCAGGAAAGGGAATACTTGCTGTTGATGAATCTACAAATACTTGTGGG 136427 ||||| | | || ||||||||||||| | |||| |||||||| ||| | || | | Sbjct 376643 AAACTTGTAGCACCAGGAAAGGGAATTTTAGCTGCAGATGAATCAACACAAACAATTAAG 376584 Query 136428 AAAAGATTGGCTAGTATTGGAGTAGAAAATACAGAGGCAAATAGACAGGCATACAGAGGT 136487 |||||||| | || ||| | | || ||||| | | ||||||| || |||| | Sbjct 376583 AAAAGATTCGATAATATAAAAATCGAGAATACCGTTGAAAATAGAGCTAACTATAGAGAT 376524 Query 136488 ATGTTATTTACCACAGAGGGATTAGGTAATTATATTAGTGGTGCTATCTTATTTGAAGAA 136547 | |||||| || | |||||||| || | ||| ||||| || |||||||||||| Sbjct 376523 TTATTATTTGGAACTAAAGGATTAGGAAAATTCATTTCAGGTGCAATTTTATTTGAAGAA 376464 Query 136548 ACACTATTTCAAGATCATGCTGATGGAGAAAGCATGATTGCAAA---GTTAGAGAAGCAA 136604 || |||| ||| | ||| | ||| | | ||| | | ||| ||| | | || Sbjct 376463 ACTTTATTCCAAAAAAATGAAGCTGGTG-TACCAT--TAGTAAACTTATTACATGATGAA 376407 Query 136605 GGAATTATACCAGGTATCAAGGTAGATAAAGGATTAAAACCATTAGT---TGGTGCATTA 136661 | || |||||||| || || || || ||||| ||| ||||| || | | Sbjct 376406 GATATAATACCAGGAATTAAAGTTGACAAAGGTTTA-----GTTAGTATCCCATGTACT- 376353 Query 136662 GAGCATGAGACATATTGTTCTGGATTAGATGGTCTAACAGAAA-GAGCAAGTGACTATTA 136720 || |||| | || || |||||||| || |||||| | |||| || ||||| Sbjct 376352 GACGATGAAAAATCAACCCAAGGTTTAGATGGATTAGCAGAAAGGTGCAA-AGAATATTA 376294 Query 136721 TGGTAGAGGTGCAAGATTTGCTAAGTGGAGAGCAGTTCTACAAATT 136766 | |||||||| ||||| || |||||||||||| || |||| Sbjct 376293 TAAAGCTGGTGCAAGGTTTGCAAAATGGAGAGCAGTTTTAGTAATT 376248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631423695579040