Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 152 3e-32 seq11 125 5e-24 >seq6 Length=837512 Score = 152 bits (168), Expect = 3e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | || || ||||| |||||||| || ||||| | | Sbjct 386494 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 386553 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || ||| |||| ||||| | |||||| || ||||||||| | || || ||||| Sbjct 386554 GATACCATTGAAAATGTTAAAGC-TAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCA 386612 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| |||||||| |||||| | ||||| | | || || || ||||| Sbjct 386613 ACAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAA 386672 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || ||||| ||||||||||| || ||||||| Sbjct 386673 CATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 386720 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || |||||||| || ||||| || ||||| | | Sbjct 386722 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 386781 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | ||| |||||| || ||||||||| | || || |||||| Sbjct 386782 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 386841 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | ||||| || || || |||||| | ||||||| | || ||| || || ||| Sbjct 386842 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 386901 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || ||||||||||||||||| || ||||||| Sbjct 386902 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 386948 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || |||||||| || ||||| || ||||| | | Sbjct 386266 ATGCAAATCTTTGTAAAAACTTTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCT 386325 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| | ||||| | |||| || || ||||||||| | || || ||||| Sbjct 386326 GATACTATTGAAAATGTTAAAGCTAAAA-TTCAAGATAAAGAAGGTATTCCACCTGATCA 386384 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| || || || |||||| | || || | | | || || |||||||| Sbjct 386385 ACAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAA 386444 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || ||||| ||||||||||| || ||||||| Sbjct 386445 CATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGG 386492 Score = 122 bits (134), Expect = 6e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAA 23696 |||||||| || || || || ||||| | | || || |||||| | ||||| | ||| Sbjct 386065 GGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCTAAA 386124 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | || || ||||||||| | || || |||||||| | ||||| ||||| || || || Sbjct 386125 A-TTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAGCA 386183 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTT 23816 | | ||||||| | || ||| || || ||||| |||||||| || || |||||||| Sbjct 386184 ATTAGAAGACGGTAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACATTT 386243 Query 23817 AGTTTTAAGGTTGCGAGGAGG 23837 ||||||||| || ||||||| Sbjct 386244 AGTTTTAAGATTAAGAGGAGG 386264 >seq11 Length=1651515 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| | || |||||||| |||||||| || ||||| | Sbjct 1491090 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1491031 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||||| | ||||| |||||| | || |||||||| | || || || Sbjct 1491030 TCTGATACAATTGAAAATGTTAAAGCAAAAA-TCCAAGATAAAGAAGGAATTCCCCCTGA 1490972 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | ||||| || || || |||||| | ||||| | | | || ||| || || Sbjct 1490971 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTA 1490912 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||||||||| || |||||||| || Sbjct 1490911 TAACATTCAAAAAGAGTCAACCTTACATTTGGT 1490879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007770945552