Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020
16-11-23] 444 sequences; 18,919,436 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq10 219 4e-52
>seq10
Length=1559237
Score = 219 bits (242), Expect = 4e-52
Identities = 591/889 (66%), Gaps = 25/889 (3%)
Strand=Plus/Minus
Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306
|||||| ||||||| || || | |||| |||||| |||||||| ||||| |||| |||
Sbjct 1415807 AACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAA 1415748
Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366
|| || ||||| || ||| ||||| ||| | | || ||| || ||
Sbjct 1415747 AGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAA 1415688
Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426
| | | | ||||| ||||| |||||||| || || || ||| ||| | || ||
Sbjct 1415687 ACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCAT 1415628
Query 4427 TCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTAT--AGTT--ACG 4481
||||||||| ||||| |||| | || ||| ||| || ||| | | || ||
Sbjct 1415627 TCCAATTAAA-TCACAAGGTAAAG---AT-TCACAAATAAATGATCTTTCTACTTCAACT 1415573
Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541
|||||| | | ||||| || | |||| | ||||||| |||| | | | |
Sbjct 1415572 GCTTCTTTAACTATATTTTGAACAACCTCTTCTGGCAATTTATTTTCTAACAAGCTATAA 1415513
Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601
| |||||| |||||| || || ||||| ||||| ||||||| ||| ||| |||
Sbjct 1415512 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAAT 1415453
Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661
||||| || | | | | | ||||||| ||||||||| || ||| ||| |
Sbjct 1415452 GTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTA 1415393
Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721
|| ||||| ||||| || ||| ||||| | || | || ||| | | |
Sbjct 1415392 AATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCG---TA 1415336
Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTT-TTTCTTAACGCACGGAATTGTGTATAT 4780
|| || |||||||| |||||| ||||| ||| ||| || || || | | ||
Sbjct 1415335 TCGTTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCT-GGTATATTTTCAAT 1415277
Query 4781 AGCGTTAAATAA-TTTACTTT---TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836
||| | |||||| |||| | | |||| || | ||||||| | || |||| ||
Sbjct 1415276 AGCATGAAATAAATTTAATCTCTCTTTCTCATCCCT----AATATAATTATCAATTAATA 1415221
Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896
||||| ||||||| ||||||||||| | ||| || ||||| | ||||| | | |
Sbjct 1415220 AACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGG 1415161
Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCG 4955
|||| ||| ||| ||||| | ||||| || ||| |||| ||||| |||||| ||
Sbjct 1415160 CTTCAATTATTTGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCCA 1415102
Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015
||||| ||||||||||| || | ||||| |||||| | | ||| | || | |
Sbjct 1415101 TCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAAT 1415042
Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075
|||| ||| |||||| | | |||||| | ||||||| |||||||||| || ||
Sbjct 1415041 TTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCC 1414982
Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTA 5124
|| |||||||| || | | ||| | ||||||||| ||| ||| |||
Sbjct 1414981 TCAGCTTTTTTATAAAAATTCCATACTTCAGGATACATAATAGGATGTA 1414933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427047289127852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |