Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 455 4e-123 seq10 235 8e-57 >seq6 Length=837512 Score = 455 bits (504), Expect = 4e-123 Identities = 1031/1530 (67%), Gaps = 45/1530 (3%) Strand=Plus/Minus Query 77111 ATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA---ATATTACT 77167 |||||||||||| | |||||| ||| || || ||| ||||| || ||||| Sbjct 430680 ATGAGGATTAACAACAAAAAATTCACCACTTAAAAC---ACGTCTGTAATAAATGTTACT 430624 Query 77168 GGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCAT 77227 ||||||||||| | |||||||| ||||| |||||||| | || ||||| |||||||| Sbjct 430623 TGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAAGCTGTTGGCAT 430564 Query 77228 AGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTT 77287 |||||| | | | | |||||| | |||||| | || ||||| | ||||| | | Sbjct 430563 AGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATC 430504 Query 77288 CCAATCCCAA-AGATCTGAAGG--TACAACATCCCAAAGATCGTATTGTAGAATTCCGTT 77344 |||||||||| | | | | | | ||| ||| | ||| |||||| ||||| | Sbjct 430503 CCAATCCCAATATTTATTATCGACTTTTGCATTCCACATATCAAATTGTAATATTCCTTG 430444 Query 77345 ACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACT 77404 || || || | ||||| |||||| ||||| | || || | |||| | Sbjct 430443 GCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTGCCAATTCAACAGA 430384 Query 77405 CGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAAT-CTTCTTATTGAGATCTTGTGCTT 77463 | ||| || || | ||||| || ||||| || || ||||| ||| | |||| |||| Sbjct 430383 CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGCTT 430325 Query 77464 CAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAA 77523 | | ||| | ||||| |||||| ||||| | |||||||||||| || ||||| | Sbjct 430324 CTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTA 430265 Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 | ||||||||||||||||| ||||| || ||| |||||| || ||||||||||| Sbjct 430264 TTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATTTC 430205 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 | || |||||||||| | ||||||| || | |||| | || | || ||| || Sbjct 430204 TTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTTTTAA 430145 Query 77644 AATCAAATC-----TTCCATCTAT-AACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 ||| |||| || ||||| |||||| || || || || || |||| ||||| Sbjct 430144 AATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAATTAC 430085 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 |||| ||||| |||| || | ||||| || || || ||||| |||||| |||| Sbjct 430084 AAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTGCATT 430025 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAA 77817 | || || || | ||||| ||| || || ||| |||| || ||||| | ||| Sbjct 430024 TAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACATAT 429965 Query 77818 ACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT- 77876 | || || ||||| || || | || | ||||| | || || | | | ||| | Sbjct 429964 ATGGTACACCAGTTTCTATTTG-GCTTTG-TAATATAG---CAAACCA-TAAATCTTGTG 429911 Query 77877 --ATCATAGATTTGTATC---GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATT 77931 | || | ||| | || | | ||| ||| |||| ||||||| |||||||| Sbjct 429910 CAAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAATT 429851 Query 77932 CATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCAC 77991 | || ||||| ||| || || || |||||||| |||||||| || | ||||| Sbjct 429850 CTTCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTCT 429791 Query 77992 CATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051 || |||||| |||| ||||||||| | |||||||| ||| | |||| ||||| ||| | Sbjct 429790 TATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCAC 429731 Query 78052 GGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAG 78111 | | ||| |||||| || || ||| ||| | | ||| | ||| || | |||||| | Sbjct 429730 GAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTG 429671 Query 78112 AATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTA 78171 ||||||||||||| | ||||| || | | || || ||| || || ||||||| Sbjct 429670 AATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTA 429611 Query 78172 TATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCAT 78231 |||||| || || | |||| ||||||| ||||| || | | ||| || ||| | |||| Sbjct 429610 CATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCAT 429551 Query 78232 TTGTTCCAGAAAT---ATAACTTCCACTTGCGCGAATATTACTAATGGATATC----CCT 78284 | ||||| || | || || | || | ||||| || || | | | ||| Sbjct 429550 TAGTTCCTCTGATGTAAGAATTTTGA---GCTCTAATAT--CT--TGTACAGCCACACCT 429498 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 || |||||||| | ||| || | || || | || ||||| || | ||||| ||| Sbjct 429497 ATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCT 429438 Query 78345 ATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 || ||| ||| || ||| || ||| || ||||||||| | ||||| Sbjct 429437 ATTGAATCAGATTTCATTGATAATAA-AAAGCATGAAGACATTTGGGGTCTTGGTGTTCC 429379 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 | |||||||||||| |||| ||||| ||||| |||||| || | || || || || Sbjct 429378 CGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGT 429319 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 ||| | ||| ||| | || | ||| ||||||| | ||| | ||| || | ||| Sbjct 429318 TTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATG 429259 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 |||||| | ||||| | |||||||| || || ||||| || |||| || ||||| Sbjct 429258 CTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTT 429199 Query 78584 AAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 ||| |||||||| | ||| ||| ||||| Sbjct 429198 AAATCCAAAATAATCGTAATTAAAATCTCT 429169 >seq10 Length=1559237 Score = 235 bits (260), Expect = 8e-57 Identities = 394/562 (70%), Gaps = 12/562 (2%) Strand=Plus/Minus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 |||||||| |||||| || | ||||||||||||||||| ||||| ||| |||| Sbjct 1415512 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAAT 1415453 Query 48195 GTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 || | ||| | | ||| | ||||||| | |||||||||||| ||| |||| Sbjct 1415452 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAATATTGCACAAAAACTTCCAC 1415395 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 ||| ||||| ||||| || ||| || || ||| || | || | ||||| Sbjct 1415394 TAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAG--TTCGT 1415337 Query 48313 T--GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 || |||||| |||||| || || || |||| || || |||| || Sbjct 1415336 ATCGTTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAAT 1415277 Query 48371 AGCATTAAAGAGAAAGtttttttCA-TTGCT-ATCTTTAACGTAAGTATCTATTAAAAGA 48428 ||||| ||| | || || | || || || ||| ||| ||| |||| ||||| | | Sbjct 1415276 AGCATGAAATA--AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAA 1415219 Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 ||||| |||| ||||| |||||||||| || || ||||| | ||||| | | ||| Sbjct 1415218 CTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCT 1415159 Query 48489 TCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCA 48548 || | || ||||| || | ||||| ||| ||||| || ||||||||||||| Sbjct 1415158 TCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCA 1415099 Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA 48608 ||||| ||||||||||||| |||||||| ||||||| |||||| || | | | ||| Sbjct 1415098 CTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTT 1415039 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 | |||| || | ||| |||||| ||||| ||||||||| ||||||||||| ||||| Sbjct 1415038 TCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCA 1414979 Query 48669 GCTTTTTTATACATATTCCATA 48690 ||||||||||| | |||||||| Sbjct 1414978 GCTTTTTTATAAAAATTCCATA 1414957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664944588160