Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 480 1e-130 seq10 214 3e-50 >seq6 Length=837512 Score = 480 bits (532), Expect = 1e-130 Identities = 1037/1530 (68%), Gaps = 43/1530 (3%) Strand=Plus/Minus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 |||||||||||||| |||||| ||| || || | || ||||| ||||| || Sbjct 430680 ATGAGGATTAACAACAAAAAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGT 430621 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||||||| | |||||||| ||||| |||||||| | |||||||| || |||||||| Sbjct 430620 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAAGCTGTTGGCATAGG 430561 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 ||| | | | | |||||| | |||||| | || ||||| | ||||| | | ||| Sbjct 430560 TGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATCCCA 430501 Query 75886 ATCCCAA-AGATCTGATGG--TACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCT 75942 ||||||| | | | || | | ||| ||| | ||| |||||| ||||| | ||| Sbjct 430500 ATCCCAATATTTATTATCGACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGGCT 430441 Query 75943 AGCATATGATCCATTATATGTTTCGTAAG-TCC-CGTCCTTTTCAGCTAGTTCGCAACTC 76000 || || | ||||| ||| || | ||| | | ||| | || | ||| | | Sbjct 430440 TGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT--GCCAATTCAACAGAC 430383 Query 76001 GCCTCTAACGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTATTAAGATCTTGCGCTTC 76059 ||||| ||| | ||||| || ||||| || || ||||| |||| |||| ||||| Sbjct 430382 ATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAAT-TCTTTAGCTTC 430324 Query 76060 AAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAAT 76119 | ||| | ||||| |||||| ||||||| |||||||| ||| || ||||| || Sbjct 430323 TTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTAT 430264 Query 76120 ACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAAT 76179 ||||||||||||||||| ||||| || |||| |||||| || || |||||||| | Sbjct 430263 TCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATTTCT 430204 Query 76180 ATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAA 76239 || |||||||||| | |||||| || | |||| | || | || ||| ||| Sbjct 430203 TTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTTTTAAA 430144 Query 76240 ATCAAATT-----TTCCATCTATCA-CAAA----CATATTAAGAGCTATAGATGCTAGAT 76289 || ||||| || ||||||| |||| |||| | || || || |||| || Sbjct 430143 ATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAAT----GCAATGGAAGCTAAAT 430088 Query 76290 TACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTAC 76349 ||||||| ||||| |||| || | ||||| || || || |||| |||||| | Sbjct 430087 TACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTGC 430028 Query 76350 ACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAA 76409 | || || ||||| | ||||| ||| || || ||||||| || ||||| | | Sbjct 430027 ATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACA 429968 Query 76410 CAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 76469 | | || |||||||| || || | || | ||||| | || || | | | ||| Sbjct 429967 TATATGGTACACCAGTTTCTATTTG-GCTTTG-TAATATAG---CAAACCA-TAAATCTT 429914 Query 76470 TT---ATTATAGATTTGTATC---GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAA 76523 | | || | ||| | || | || ||| ||| |||| ||||||||| ||||| Sbjct 429913 GTGCAAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAA 429854 Query 76524 ATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACT 76583 |||| || ||||| ||| || || ||||||||||| || ||||| || | ||| | Sbjct 429853 ATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGT 429794 Query 76584 CACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 76643 || |||||| || | ||||||||| | |||||||| ||| | |||| ||||| || Sbjct 429793 TCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAAT 429734 Query 76644 CTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATAT 76703 | || | ||| |||||| || || ||| ||| | | ||||| || || | ||||| Sbjct 429733 CACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATAT 429674 Query 76704 CAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGAT 76763 | |||||||||||||| | ||||| || | | ||| || ||| || || |||| Sbjct 429673 CTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGAT 429614 Query 76764 CTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTAC 76823 ||| |||||| || || | |||| ||||||| ||||| || | | || || ||| ||| Sbjct 429613 CTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATAC 429554 Query 76824 CATTTGTTCCAGAAAT---ATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTA 76880 |||| ||||| || | || || | || | ||||| | || | |||| Sbjct 429553 CATTAGTTCCTCTGATGTAAGAATTTTGA---GCTCTAATATCTTGTACAGCCACACCTA 429497 Query 76881 TTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTA 76940 | |||||||| ||||| || | ||||| | || ||||| ||| | || || |||| Sbjct 429496 TACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTA 429437 Query 76941 TACTATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 | |||| ||| || ||| || ||| || ||||||||| | ||||| Sbjct 429436 TTGAATCAGATTTCATTGATAATAA-AAAGCATGAAGACATTTGGGGTCTTGGTGTTCCC 429378 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 | |||||| |||||||||| |||||||| || |||||| || | || || || ||| Sbjct 429377 GAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTT 429318 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 || | | | ||| | ||| | ||| ||||||| || || | ||| || | |||| Sbjct 429317 TCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGC 429258 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 ||||| ||||| | | | |||||||| || || ||||| || |||| || |||||| Sbjct 429257 TGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTA 429198 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTT 77209 || |||||||| | ||| ||| |||||| Sbjct 429197 AATCCAAAATAATCGTAATTAAAATCTCTT 429168 >seq10 Length=1559237 Score = 214 bits (236), Expect = 3e-50 Identities = 399/576 (69%), Gaps = 20/576 (3%) Strand=Plus/Minus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| |||||| || | ||||||||||||||||| ||||| ||| |||| Sbjct 1415512 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAAT 1415453 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || | ||| | | ||| | | ||||| | ||||||||| || ||| |||| Sbjct 1415452 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAATATTGCACAAAAACTTCCAC 1415395 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG---GCAT 46798 ||| ||||| ||||| ||| || || |||| ||| || | || | | || Sbjct 1415394 TAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTAT 1415335 Query 46799 CATTATGAATCCACCTTTGAGC--CCAATCAGCCTTT-TTCTTTACACAAGGCATTGTTT 46855 | || ||||| || ||| || || | |||| || |||| || || ||| Sbjct 1415334 CGTTT---ATCCA---TTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTT 1415281 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCA-TCACT-ATCTTTAACATATGTATCTATTAA 46913 | ||||||| ||| | || || | || | || ||| ||| ||| |||| ||||| Sbjct 1415280 CAATAGCATGAAATA--AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAA 1415223 Query 46914 AAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCT 46973 | |||||| |||| || || || ||||||| ||| || ||||| | ||||| | | Sbjct 1415222 TAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTT 1415163 Query 46974 TGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCC 47033 |||||| | || ||||| ||| | ||||| || ||||| || |||||||| Sbjct 1415162 GGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCC 1415103 Query 47034 ATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG 47093 ||||||||| ||||||||||| | |||||||| ||||||| |||||||| | | | Sbjct 1415102 ATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAA 1415043 Query 47094 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 ||| | |||| || | ||| |||||| ||||| ||||||||| ||||| ||||| || Sbjct 1415042 TTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGC 1414983 Query 47154 CTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 ||| ||||||||||| | |||||||| ||| |||| Sbjct 1414982 CTCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 1414947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712930443214080