Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6 105 2e-17 seq11 100 7e-16 >seq6 Length=837512 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 ||| || |||||||| |||||||| || | || ||||| |||||||||| ||| || Sbjct 386691 AGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCC 386632 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 ||| || || | || || || || | | || ||||| || ||||||||||| ||| Sbjct 386631 GGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTT 386572 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| | || | | | || || ||| || |||||||| || ||||| || || | ||| Sbjct 386571 AACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGT 386512 Query 152087 CTTCACGAAGACCTGCAT 152104 || ||||| | |||||| Sbjct 386511 TTTTACGAAAATCTGCAT 386494 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| |||||||| ||||||||||| | || ||||| ||||| |||| ||| || Sbjct 386462 GTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCA 386403 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | || || || || | | || ||||| || ||||||||||| ||| Sbjct 386402 GCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTA 386343 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || || || || ||||||||||| ||||| || || | ||| Sbjct 386342 ACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAAAGTT 386283 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 386282 TTTACAAAGATTTGCAT 386266 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| |||||||| ||||| || || | ||| ||||| || ||||||| ||| || Sbjct 386918 GTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCA 386859 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | || || || || | | ||| ||||| || ||||||||||| ||| Sbjct 386858 GCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTGGCTTTA 386799 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | | ||||| || || ||||||||||| ||||| || || | || Sbjct 386798 ACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTT 386739 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | ||||| Sbjct 386738 TTTACGAAAATTTGCAT 386722 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 ||||| |||||||| ||||| || || | ||| ||||| || ||||||| ||||| | Sbjct 386234 GTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGCTTT--C 386177 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || || || | || || || || | | ||| ||||| || ||||||||||| || Sbjct 386176 CAGCAAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTT 386117 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 | ||| | || | | | || || ||| || ||||| || |||||||| || Sbjct 386116 TAACATTTTCAATGGTATCGGATGGCTCAACATCAAGGGTTATAGTTTTTCC 386065 >seq11 Length=1651515 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||||||||| ||||| || || | ||| ||||| |||||||||| ||| || Sbjct 1490891 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1490950 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | || || || || | | |||||||| || ||||| |||||| ||| Sbjct 1490951 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1491010 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || || || || |||||||| || ||||| || || | || Sbjct 1491011 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1491070 Query 152088 TTCACGAAGACCTGCATTTT 152107 || || |||| |||||||| Sbjct 1491071 TTTACAAAGATTTGCATTTT 1491090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153814236201924