Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq10 228 8e-55 >seq10 Length=1559237 Score = 228 bits (252), Expect = 8e-55 Identities = 568/846 (67%), Gaps = 45/846 (5%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| ||||||||| || |||| | |||| || |||||||| || || | Sbjct 1415810 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1415751 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATAT--ACAGCTTT---- 23318 ||| ||||| ||||| || ||||||||| | || || | | |||| Sbjct 1415750 TAAAGATATTAAGTCCATCCAACTAAATGGATT-----TTTTGAATGGAAAACTTTGGAG 1415696 Query 23319 --ACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAA 23376 || | | |||| ||| | | ||| || ||||||||||| |||||| |||| || Sbjct 1415695 CAACCTAAACATTC---TAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAG 1415640 Query 23377 TCAT-AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAAT 23435 || | | || || || |||| | || | | ||| | | ||| | |||| | Sbjct 1415639 TCTTGAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTAC 1415580 Query 23436 GGAAACAGCATCTTTAATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTTAA 23492 ||| || ||||||| ||| |||||||| ||||| | | | || || ||| Sbjct 1415579 TTCAACTGCTTCTTTAACTATATTTTGAACAACCTCTTCTGG-CAATTT--ATTTTCTAA 1415523 Query 23493 ATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTC 23552 | || | | |||||| |||||| |||| |||||||| |||||||||||||| Sbjct 1415522 CAAGCTATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTC 1415463 Query 23553 ATTAGAAAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAA 23611 |||| ||||||||| || || ||| || | ||||||||| ||||||||||||| || Sbjct 1415462 ATTACTAAATGTTAAACCATGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAA 1415404 Query 23612 ATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATG 23671 | ||| ||| || || || || ||| ||| || |||| | | | |||| | Sbjct 1415403 AACTTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG 1415344 Query 23672 TTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA- 23730 || ||| |||||||| || ||| | | ||| | |||| || Sbjct 1415343 AG---TTCGTATCGTTTATCCATTTAGCTGCCCA-TAATGCTTTATTTTTTATTGCTGGT 1415288 Query 23731 ATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCT-TCATT---ATCTGTTATATATGT 23786 || ||||||| || | || | || ||| ||| || || ||| | ||||| | Sbjct 1415287 ATATTTTCAATAGCAT----GAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATT 1415232 Query 23787 ATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATA 23846 |||||||| ||||||||| ||||||| || |||||||||| ||| || ||||| |||| Sbjct 1415231 ATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATA 1415172 Query 23847 AAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTT 23906 ||| | | |||||| | ||| || || | |||||| | ||||||||||||| Sbjct 1415171 AAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAA 1415112 Query 23907 AACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT- 23965 || || ||||||||||| ||||| || || || |||| ||||||||||||| |||||| Sbjct 1415111 TACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATT 1415052 Query 23966 --CAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGT 24023 || | |||||||| | || || | ||| |||||||||| | ||| ||| | || Sbjct 1415051 TACATT---TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGT 1414995 Query 24024 CCAAAA 24029 |||||| Sbjct 1414994 CCAAAA 1414989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521485105741600