Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq4 118 1e-21 seq7 116 5e-21 >seq4 Length=712013 Score = 118 bits (130), Expect = 1e-21 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||| ||||||| || || | || || ||||||| ||||| || | ||||| || Sbjct 69146 TTTAATATTTGAATCCGACCTTCTTTATTGGGTAATGATATTTCAATATGTAATTCAAAT 69205 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || |||||||| |||||||| || ||||| || ||| || |||||||| || | | Sbjct 69206 CGACCTGGTCTTAACAATGCTTCATCGATTAAATCTATTCTATTTGTCATACCAATTAAT 69265 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTA 156045 | || || |||||| | ||| || |||||||| || ||||||||||| |||| Sbjct 69266 AGTATATTATTTAAACTATTTACTCCATCTATTTTTGATAATAATTGATTAACTA 69320 >seq7 Length=1041357 Score = 116 bits (128), Expect = 5e-21 Identities = 269/395 (68%), Gaps = 18/395 (5%) Strand=Plus/Plus Query 50478 GATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT-TG 50536 || ||||| || ||||||| ||||||||||| || ||||| || || | | || || Sbjct 912144 GACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGATATG 912203 Query 50537 CGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACG-TTGA 50595 | | | |||| ||| | |||| || ||||| | |||| ||||||| || | Sbjct 912204 C-ATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATTTAATTAA 912262 Query 50596 AAACAAACCCCGACGATCGGCGTATT--TTAATGACCGCCTGGAATCCAACCGATATAGA 50653 |||| | || | | | | || ||| || ||| || |||||| || ||| |||| Sbjct 912263 AAACGATCCGACATG-TAGACGAATTATTTTATGT--GCATGGAATGTAAAAGATTTAGA 912319 Query 50654 TCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG----CCACAGACAATG 50709 ||||| | |||||||| |||||| |||||||||||||||||| | || || Sbjct 912320 TCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAA-- 912377 Query 50710 TTTTATCCTGT-CAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAAC 50768 ||||| ||| ||| ||||||||||| |||| | ||| | || ||||| ||||| Sbjct 912378 --TTATCATGTATTATG-TATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAAT 912434 Query 50769 GTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGA 50828 | ||||| || || |||| || ||| |||| || |||| || | |||| | Sbjct 912435 ATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCT 912494 Query 50829 GAATTTATTCATACGTTAGGAGACGCTCATATTTA 50863 |||||||| ||| || ||| | |||||| |||| Sbjct 912495 GAATTTATACATGTATTGGGAAATGCTCATGTTTA 912529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667071497732640