Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 134 3e-26 seq11 122 2e-22 >seq6 Length=837512 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || |||||||| || || || || || ||| ||||| Sbjct 386725 CAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCAGAT 386784 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| || ||||| || |||||||| ||||| || || || ||| Sbjct 386785 ACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAA 386844 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| | ||||| || || || | | || |||||| | Sbjct 386845 AGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAACATT 386904 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || | ||| | ||||| ||| | ||| Sbjct 386905 CAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGA 386943 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || || ||||| ||||| || || || || || || Sbjct 386497 CAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCTGAT 386556 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| || |||||||| || ||||| || || ||| Sbjct 386557 ACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAACAA 386616 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||||||||| | |||||||| || || || | || || ||| | Sbjct 386617 AGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAACATT 386676 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || | || | ||||| ||| | ||| Sbjct 386677 CAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGA 386715 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || |||||||| || || || || || ||| || || Sbjct 386269 CAAATCTTTGTAAAAACTTTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCTGAT 386328 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || |||||||| || || || || || ||| Sbjct 386329 ACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAACAA 386388 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| | || |||||||| || || | ||||| ||| | Sbjct 386389 AGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAACATT 386448 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || | || | ||||| ||| | ||| Sbjct 386449 CAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGA 386487 Score = 104 bits (114), Expect = 6e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||||||||| || ||||| || || || || || ||||| || || || ||| | Sbjct 386063 CAGGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCTA 386122 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | ||||| || |||||||| ||||| || || || ||| || | || || || ||||| | Sbjct 386123 AAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAGC 386182 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | | ||||| || || || | | || |||||| | ||||||||||| || | ||| Sbjct 386183 AATTAGAAGACGGTAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACATT 386242 Query 178126 TTGTTTTGAGACTCAGA 178142 | ||||| ||| | ||| Sbjct 386243 TAGTTTTAAGATTAAGA 386259 >seq11 Length=1651515 Score = 122 bits (134), Expect = 2e-22 Identities = 149/203 (73%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || || ||||| | || |||||||| ||||| || || || ||| Sbjct 1491090 AAAATGC---AAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA 1491034 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| ||| || || || ||||||||||| || || Sbjct 1491033 CCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCT 1490974 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||| || | || ||||| |||||||| | ||||||||||| || | | || Sbjct 1490973 GATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGAC 1490914 Query 178095 TATAACGTCCAAAAAGAATCAAC 178117 |||||| | |||||||| ||||| Sbjct 1490913 TATAACATTCAAAAAGAGTCAAC 1490891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203724352274136