Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq10 107 2e-18 >seq10 Length=1634725 Score = 107 bits (118), Expect = 2e-18 Identities = 556/865 (64%), Gaps = 29/865 (3%) Strand=Plus/Minus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 |||||| | |||| ||||| ||| | ||||| ||||| || |||||||| | ||| Sbjct 1455790 AACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAA 1455731 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCA 16019 |||||| ||||| || ||| ||||| | | || ||| | || ||| | || | Sbjct 1455730 AGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACT-TTGGAGCAACCTA 1455672 Query 16020 G---TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGC-AA 16075 ||| ||| ||||| ||| || |||||||| || |||||| |||| ||||| || Sbjct 1455671 AACATTC--TAA-TAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAA 1455616 Query 16076 TTAATTCCTAT-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAAC 16134 || ||||| || || || | | || || || | |||| | ||||| |||| Sbjct 1455615 TTCATTCCAATTAAATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAAC 1455557 Query 16135 CGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAA 16194 |||||||||| |||| | ||| | | ||| | | || | Sbjct 1455556 TGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCTATA 1455497 Query 16195 CATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAA 16254 |||| ||| || || |||| |||||| ||||| || || | ||| || ||| Sbjct 1455496 AATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAA 1455437 Query 16255 AGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGA 16314 ||||| || | | ||| | |||| || ||||| ||||| ||| ||| || Sbjct 1455436 TGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACT 1455377 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTT 16374 ||| ||||| || || ||| ||||| ||| | | || ||| || | | || || | Sbjct 1455376 AAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG-AGT-TCGT- 1455320 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || | |||||||| | ||||| ||||| | |||||| || |||| || Sbjct 1455319 ATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAAT 1455260 Query 16435 GGCCTTAAACAATTT----CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 || | ||| || || |||| |||| ||| | ||||| ||||||| | || Sbjct 1455259 AGCATGAAATAAATTTAATCTCTCTTTCTC----ATCCCTAATATAATTATCAATTAATA 1455204 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 |||| || |||| |||||||| || || | ||||| ||||| |||| || | | Sbjct 1455203 AACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGG 1455144 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTC-CGCCAGGTTCTCATTCACGATACCG 16609 | || ||||||||||| | | ||||| | | || | || || || || || Sbjct 1455143 CTTCAATTATTTGTACTT-CTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCA 1455085 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTC-GTCAGATGTAAG 16668 ||||| || |||||||| || | | || || || |||| |||||| | | || || Sbjct 1455084 TCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTA-- 1455027 Query 16669 AATATGCCAA-TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 | | | | || ||||| ||||| | |||| ||| | |||||| | |||||||| | Sbjct 1455026 ATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGG 1454967 Query 16728 CCACTGCCTTTTTATACATTTTCCA 16752 || | || |||||||| | ||||| Sbjct 1454966 CCTCAGCTTTTTTATAAAAATTCCA 1454942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414150685480