Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 372 4e-98 seq10 190 2e-43 >seq6 Length=916956 Score = 372 bits (412), Expect = 4e-98 Identities = 967/1460 (66%), Gaps = 33/1460 (2%) Strand=Plus/Minus Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | ||||| Sbjct 509181 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 509122 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302 || || ||||||||||| | | | | |||||| | |||| | | || ||||| | | Sbjct 509121 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 509062 Query 53303 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 53359 |||| ||||||| |||| | ||| | |||| Sbjct 509061 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 509002 Query 53360 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 53416 | || || | || || | || | ||| ||||| || |||||||| || ||| | Sbjct 509001 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 508945 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 53475 || | |||| | | ||||| ||| | ||||| || ||||| || || ||||| ||| Sbjct 508944 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 508886 Query 53476 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 53533 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 508885 TAATTCTTTAGCTTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 508828 Query 53534 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 53593 |||||||| || || || || |||||||||||||| ||||| || |||| |||||| | Sbjct 508827 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 508768 Query 53594 ATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACA 53653 | ||||||||||| | || |||||||||| | ||||| ||| | ||| | | Sbjct 508767 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 508708 Query 53654 TCCTTCAGTTTGAGAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCA 53707 || | | ||| ||||| ||| || | ||||| ||||| || |||||| Sbjct 508707 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 508648 Query 53708 ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 53767 || || || | ||||||||| ||||| |||| || | ||||| || || ||| Sbjct 508647 ATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 508588 Query 53768 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 53827 || | |||||| || || || ||||||||||||| |||||| || ||||| ||| Sbjct 508587 CATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCA 508528 Query 53828 TCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAG 53887 || ||||| | || |||| ||||||||| || ||| || || || || ||| Sbjct 508527 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 508468 Query 53888 ACGACACGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATAC 53944 | | | || | || | ||| | || |||||| ||||||| |||||| Sbjct 508467 AAATCTTGTGC---AAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATAT 508411 Query 53945 AATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 54004 ||| |||||| || || ||||| | || || |||||||| | || ||||| Sbjct 508410 AATTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATT 508351 Query 54005 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 54064 || | ||| | | ||||| |||| ||||||||| | |||||| | ||||| ||| Sbjct 508350 AAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCA 508291 Query 54065 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 54124 ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | || Sbjct 508290 TAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAAT 508231 Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184 | | |||||| |||||||| ||||| | |||| | | | || | ||| | Sbjct 508230 TCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCT 508171 Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || || ||||||| ||||| || || | |||| ||||||| ||||| || | | |||| Sbjct 508170 CCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCA 508111 Query 54245 TTGGATGCACCATTGGTCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTG 54302 || ||| |||||| || || ||| | || | || || | ||||| | | Sbjct 508110 TTTGATATACCATTAGTTCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAG 508053 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 | |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | | Sbjct 508052 CCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATA 507993 Query 54363 TGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421 | || ||||| |||| ||| || ||| || ||| || |||||||||| | | Sbjct 507992 TACCTTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTT 507934 Query 54422 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 54481 ||||||| ||||||||| ||||||| ||| || ||||| |||||| || | || | Sbjct 507933 GGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAA 507874 Query 54482 TTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 54541 | || || || | ||| || | ||| | ||| ||||||| | || | |||| Sbjct 507873 TGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATT 507814 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 || | |||||||| | ||||| || || || || || | ||||| || |||| Sbjct 507813 AATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCT 507754 Query 54602 AAAGTTTTAAAACCAAAATA 54621 || |||||||| |||||||| Sbjct 507753 AATGTTTTAAATCCAAAATA 507734 >seq10 Length=1634725 Score = 190 bits (210), Expect = 2e-43 Identities = 379/556 (68%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| ||||| || || ||||||||||| ||||| || ||| || | || | Sbjct 1455483 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 1455424 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1455423 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1455364 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTT 24320 || || ||| || | || |||||| || || | | |||| |||||| || Sbjct 1455363 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTA 1455304 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 1455303 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1455244 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | | || || ||| ||| ||| ||||||| || | |||||| |||| || || Sbjct 1455243 AATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 1455184 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||||| || |||||||| | || || | | || || | || ||||||||| Sbjct 1455183 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCT 1455124 Query 24501 ATACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | ||||| | || ||||||||||| |||||||| ||||| ||||||||||| || Sbjct 1455123 CTTAAAAATT-TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1455065 Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATAT 24618 | |||||||||||||||| |||||| | | ||| ||| ||| || || || | || Sbjct 1455064 TAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1455006 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 | | |||| ||| | |||||| | ||||||||||| ||||| || |||||||| | || Sbjct 1455005 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1454946 Query 24679 TCCAGATGTCATGATA 24694 |||| | ||| |||| Sbjct 1454945 TCCATACTTCAGGATA 1454930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721310560720