Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 >seq6 Length=916956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| || || || ||||| ||||| || ||||| | Sbjct 465965 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATTACTCTTGATGTTGAACCATCT 466024 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| |||||| |||||||||||| | || |||||| Sbjct 466025 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 466084 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || || || || |||||| | || ||| | ||| | | |||||||| Sbjct 466085 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 466144 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || |||||||| | ||| | || ||| ||||| ||||||| Sbjct 466145 ATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGG 466191 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| |||||||||||| | || |||||||||||| | || ||||| || ||| Sbjct 466277 AAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAACAAAGATTAATTTTTGCCGGAAAA 466336 Query 29106 CAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163 ||| | |||||| | || ||||| | || ||||| ||||| || ||||| ||| | | Sbjct 466337 CAATTAGAAGATGGTAGAACACTAT--CTGACTACAACATTCAAAAAGAATCGACTTTAC 466394 Query 29164 ACATGGTGTTACGATTACGAGGAGG 29188 || | || ||| ||||| ||||||| Sbjct 466395 ACTTAGTTTTAAGATTAAGAGGAGG 466419 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||||| || || ||||| ||||| || ||||| || Sbjct 466421 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 466480 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | |||| |||||| |||||||||||| | || |||||| Sbjct 466481 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 466540 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || || || || |||||| | ||||| | ||| | | || || || Sbjct 466541 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 466600 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || |||||||| | || | || ||| ||||| ||||||| Sbjct 466601 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 466647 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| |||||||||||| | || |||||||||||| | || ||||| || || Sbjct 465821 AAAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAG 465880 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| | |||||| | ||| | | || || || ||||| || |||||||| | ||| Sbjct 465881 CAATTAGAAGATGGAAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACAC 465940 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 | || ||| ||||| ||||||| Sbjct 465941 TTAGTTTTAAGATTAAGAGGAGG 465963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335796406545