Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7 149 4e-31 >seq7 Length=1169068 Score = 149 bits (164), Expect = 4e-31 Identities = 350/524 (67%), Gaps = 6/524 (1%) Strand=Plus/Minus Query 96997 AACTTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCAT-CAAT 97055 || || || || |||||||| ||| |||| | | ||| || | | ||| | ||| Sbjct 995884 AATTTAAGAGTAGGGAAAGGATAGGGTGTTCTATTTAACTGGACTTTTA-AGCTTTCAAC 995826 Query 97056 GTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATC 97115 ||||| ||||| ||||||| ||| || || |||||||| | || ||||| Sbjct 995825 ATGATTATTATAAACATGAGCATTTCCCAATACATGTATAAATTCAGCTGGTTGTAAATT 995766 Query 97116 AGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCC 97175 | || || || |||||| | || |||| ||||||| |||||| || || || || || Sbjct 995765 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACC 995706 Query 97176 TAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATA 97235 || || | |||| ||||||||||| | ||| || | ||||||||| | ||||| Sbjct 995705 AAGACCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATA 995646 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 ||| |||| || | |||||| || || || ||||||| | |||| |||||||| Sbjct 995645 AAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCA 995586 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTT 97355 ||||| | | |||| |||| || || | | | || ||| || || | || Sbjct 995585 TGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATATTTTT 995526 Query 97356 TAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAA 97415 ||| |||||||| |||| | ||||| | | | || |||||| || ||||| Sbjct 995525 TAACTGATCAACACCTTTATCTTTATAATCAGCATGCATATCTGTATATTCAGCACCAAA 995466 Query 97416 ATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA--A 97473 ||||||||||| ||||| |||| || || | ||| ||||||||| | | || Sbjct 995465 GTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTAACTTCTCTATGAAATAATTT 995406 Query 97474 CCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 || | ||||||||| | || | ||||| || ||||| || Sbjct 995405 CCTA--TTATCTAAAAACTCTCTTGTCCCATTAGCTTCCCATAT 995364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783835169230