Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 304 2e-77 seq6 187 4e-42 seq11 185 1e-41 seq3 84.2 3e-11 >seq7 Length=1169068 Score = 304 bits (336), Expect = 2e-77 Identities = 513/732 (70%), Gaps = 17/732 (2%) Strand=Plus/Minus Query 205368 TTTTAATCCATTAATATGATTAACATATATATGTGCATTACC-AATATTATGAATAAATT 205426 |||||| | | || ||||||| ||| | ||| ||||| || |||| ||| ||||||| Sbjct 995840 TTTTAAGCTTTCAACATGATTATTATAAACATGAGCATTTCCCAATAC-ATGTATAAATT 995782 Query 205427 CATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAA 205486 || ||||| ||||||| || ||||| |||||||| || |||| | ||| ||||| Sbjct 995781 CAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAA 995722 Query 205487 CATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGAT 205546 ||| ||||| ||||| | ||| | |||| |||||||||||||| ||||| | Sbjct 995721 TATTGAATGGAACACCAAGACCTAAATCACAAGATCTTTGATACATAATACATGATA--- 995665 Query 205547 ATTTATTATTAATTACATGAAATTGTACA-AAACAATGACAAGGTGGTATAACCATATTT 205605 |||| || || |||| |||||| ||| ||| ||||||||| |||| |||| | Sbjct 995664 ATTTTCCATCAAAAACATAAAATTG-ACATAAAATATGACAAGGAGGTAATGCCATTTGA 995606 Query 205606 TCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttatttttt 205665 || | |||| | |||||| || ||| || || |||| || || | ||||| Sbjct 995605 TCTAAATCTTTTACATTCCATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTA 995546 Query 205666 attttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATA 205725 ||| ||||||||||| | |||| ||||||| |||| || | |||||| | || |||| Sbjct 995545 ATTAAATTTATAATATTTTTTAACTGATCAACACCTTTATCTTTATAATCAGCATGCATA 995486 Query 205726 TCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 || |||||| ||||||||| || | ||||||||| || |||| ||||||||| ||| Sbjct 995485 TCTGTATATTCAGCACCAAAGTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTA 995426 Query 205786 TCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaa 205845 ||| ||||| | || | || | || | | | | || ||||| | |||| Sbjct 995425 ACTTCTCTATGAAATAATTTCCTATTATCTAAAAACTCTCTTGTCCCATTAGCTTCCC-- 995368 Query 205846 atatggattcctttattttttaGAA--TATTTGTATTAGTTGATCCAGATATAAACCATA 205903 |||| | | ||| ||| | | || ||||| ||| ||| ||| ||||||||||| Sbjct 995367 ATATTCTTACGTTTTTTTCTAATAATGTATTTCCATTTGTTTCTCCCCTTATAAACCATA 995308 Query 205904 ATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAAT 205963 || ||||||| || ||||| ||| | | ||||||||| ||||||||||| | | Sbjct 995307 GCAACTCTTCAATGATACCTCTTACAAATAATTTTTTTGTTGTTAATAATGGAAAATATT 995248 Query 205964 CATCTAATTTATATTTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT 206023 || ||| ||| ||||||| | | ||| || | || | | | ||||||||||||| Sbjct 995247 CACTTAAATTAAATTTCATCATATATCCAAATTTACTTAATACACCAACACCTGTTCTAT 995188 Query 206024 --TTTTGGTTATTCTTCCATTAGATAATATTTCTGATATACCTTTTAAATATTGATATTC 206081 | ||| |||| |||||| || ||| || ||||| ||||||||||||||||| Sbjct 995187 CATCTTGTTTAT--TTCCATGCATTATTATATCATATATAATATTTAAATATTGATATTC 995130 Query 206082 ATCTGATGATGT 206093 | |||||||| Sbjct 995129 A--GGATGATGT 995120 >seq6 Length=916956 Score = 187 bits (206), Expect = 4e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 466421 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 466480 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||||||||||||||||| |||||||||||| Sbjct 466481 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 466540 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || |||||||||||||| || || |||||||| || ||||| Sbjct 466541 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 466600 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||||||| || || ||||| |||||| | ||| |||| ||| Sbjct 466601 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGGT 466648 Score = 185 bits (204), Expect = 1e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||| || |||| || ||||| || ||| | || ||||| || | Sbjct 465965 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATTACTCTTGATGTTGAACCATCT 466024 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||||||||||||||| |||||||||||| Sbjct 466025 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 466084 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || |||||||||||||||||| | ||||| || ||||| || Sbjct 466085 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 466144 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || || || || |||||| | ||| |||| ||||| Sbjct 466145 ATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGGTAT 466194 Score = 185 bits (204), Expect = 1e-41 Identities = 190/247 (77%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||| || |||| || ||||| || ||| | || |||| || | Sbjct 466193 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 466252 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct 466253 GATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 466312 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| |||||||||||||| ||| || ||||| || || || || Sbjct 466313 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 466372 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||||||||| ||||| || || |||||| | ||| |||| ||||| ||| ||| Sbjct 466373 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGGTATGCAAATTTTC 466432 Query 124778 ATAAAAA 124784 |||||| Sbjct 466433 GTAAAAA 466439 Score = 172 bits (190), Expect = 8e-38 Identities = 161/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 |||| ||||||||||| | || |||| || ||||| ||| ||| | ||| | Sbjct 465762 CAGGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCTA 465821 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 |||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||| | Sbjct 465822 AAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAGC 465881 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 ||||||| ||| | |||||||| || ||||| |||||||||||||| || || || | Sbjct 465882 AATTAGAAGATGGAAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACACT 465941 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | |||||| | ||| |||| ||||| Sbjct 465942 TAGTTTTAAGATTAAGAGGAGGTAT 465966 >seq11 Length=1720574 Score = 185 bits (204), Expect = 1e-41 Identities = 169/211 (80%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 1496632 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1496573 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| ||| ||||| || ||||| |||||||||||||| || || ||||||| Sbjct 1496572 TGATACAATTGAAAATGTTAAAGCA-AAAATCCAAGATAAAGAAGGAATTCCCCCTGATC 1496514 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | ||||| || |||||||||||||| ||| | |||||||| || |||| Sbjct 1496513 AACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTATA 1496454 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | ||||||||||| ||||| || |||||||| Sbjct 1496453 ACATTCAAAAAGAGTCAACCTTACATTTGGT 1496423 >seq3 Length=624158 Score = 84.2 bits (92), Expect = 3e-11 Identities = 654/1005 (65%), Gaps = 127/1005 (13%) Strand=Plus/Minus Query 228198 attaaatattagtaattgtaatataataaatgctagttctttaaaaaatt--taattaat 228255 ||||| || || |||| ||||||| ||||| || |||| ||| || |||||| Sbjct 349900 ATTAATTAATATAAATTATAATATAGTAAATAATA----TTTATAAATTTATTAATTATA 349845 Query 228256 ttaaa-agaattggatatatctaacaat--tataatataaatatttCA-TCATTACCaaa 228311 ||| || ||| ||| | ||| || ||||||| |||||||| | | | || | | Sbjct 349844 TTATTTAGTATTAAATAAAATTAAATATATTATAATA-AAATATTTAAATTAATATAATA 349786 Query 228312 aacattaattaaattaaa--tattagttcatg-taatata---------aaaaatactaa 228359 || | ||| || ||| || ||||| | || ||||||| ||||||| || Sbjct 349785 AAAAATAAATATATTTAAATTATTATTAAATAATAATATATAATTAATTAAAAATAAAAA 349726 Query 228360 ttttataattaatttagataatttGAAAGAATTAGATATATCTAG-AAATTTTA------ 228412 | | ||||||| ||| || | ||| || || |||||| | ||||| || Sbjct 349725 ATGTGTAATTAAATTA----ATATTAAATAAATAAATATATTTTTTAAATTATATTAATT 349670 Query 228413 ---ATATAA-ATATTTCATCATTACCAAAATCATTAATCAAATTAAATATTAGGACATGT 228468 |||||| |||||| || || | |||| || ||| ||||||| | || | || | Sbjct 349669 ATTATATAATATATTTAAT-ATAAATAAAAACAATAAATTAATTAAAGAATATTATATTT 349611 Query 228469 TATATAAAAAATACTAATTTTATAATTAATTTAGATAATTTGAAAGAATTAGATATATCT 228528 ||| |||| ||| | || ||| | ||| | || ||| ||| | |||||| Sbjct 349610 TAT-TAAATAATTATTATAAAATATTAAAT--AAATTATTATAAATGTAAATATATATTA 349554 Query 228529 AGAAATTTTAATATAAATATTTCATCATTACCA--AAATCATTGATTACATTAAATATTA 228586 ||||| | |||| || | || || |||| |||| ||| |||| ||||| |||| Sbjct 349553 TTAAATTATCATATTTAT---TAATAATAACCATTAAAT-ATTAATTAT-TTAAAAATTA 349499 Query 228587 ATTC---ATGTTATATAAAACACACTAATTTTATAAATG-ATTTATATAATTTGAAGGAA 228642 ||| || ||| |||| | | | ||| ||| ||| ||||||||| || | || Sbjct 349498 ATTATATATTTTAATTAAATAAAAATGATTATATTAATTTATTTATATATATTATATTAA 349439 Query 228643 TTGGATATATCTAGAAATTATAATATAAATATTTCATCATTACCAAAATCA--TTAATCA 228700 || ||||| |||| || || ||| |||| || ||| || || | ||||| | Sbjct 349438 TTAAATATA-----AAATAATTATTTAATAATTTTAT--TTA--AAGATTAAATTAATTA 349388 Query 228701 AA-TTAAATATTAGTGATTGCGATATTAAAAATACTAATTTTATAAATGATTTAGATAAT 228759 || |||||||| || |||| | ||||| ||| |||||||| | ||| ||| | Sbjct 349387 AAATTAAATAT-----AT----ATAT-ATAAATAA-AATATTATAAATTAATTAAATATT 349339 Query 228760 -TTGAAAGA-ATTAGATATATCTAACAATTATAATATAAATATTTCATCATTACCAAAAA 228817 || ||| | |||| | ||| || ||||||| | ||||| | |||| |||| Sbjct 349338 ATTAAAATATATTATTTTTATTTATTAATTATATT-TAAAT------TAATTA---AAAA 349289 Query 228818 CATTGAC-TACATTAAATATTAGTTCATGTAATATAAAAAATACtaattttat-aattaa 228875 |||| |||| | ||||||| | || | |||| |||| || | ||| |||||| Sbjct 349288 CATTATTATACAATTAATATTATT--ATTTT---TAAACAATAATATGTATATTAATTAA 349234 Query 228876 tttag---ataatttgaa--agaattag-atatatctaaaaattttaatataaatatttC 228929 || | ||||| || | ||||| |||||| ||| ||||| |||| || ||||| Sbjct 349233 TTAAACATATAATAAAAATAATAATTAATATATATTTAATAATTT-AATA-AATTATTTT 349176 Query 228930 ATCAT-TACCAAAATCATTGATTAC--ATTAAATAT-TAATTCATGTTATATAAACCAT- 228984 | || || || || | | || | ||| |||| ||||| | | ||||| | || Sbjct 349175 TTAATATAATAATATTAAT-ATGTCTTATTTAATAAATAATTATTTTAATATATAATATT 349117 Query 228985 ---ACTAATTTTATAAATGATTTATATAATTTGAAAGAATTAGATATATCTAACAATTAT 229041 | |||||| ||| | |||||| |||| | ||| |||| ||| || | | ||| Sbjct 349116 ATTATTAATTTAATATGT-ATTTATTTAATATAAAATAATTTAATAAATATTTTATTTAA 349058 Query 229042 AATATAA-ATATTTCATCATTACCA-AATACATTAATTGAATTAAATATTAGTTCGTGTT 229099 |||||| || || || ||| | ||| | ||||| ||| |||||||| | | | Sbjct 349057 TATATAATATTATTAAT--TTAATATAATTAAATAATTTAAT-AAATATTATAT--TTTA 349003 Query 229100 ATATAAAAAAT-ACTAATTT------TATAATTAATTTAGATAAT 229137 ||||| | ||| | |||||| ||||||||||| | ||||| Sbjct 349002 ATATATATAATCATTAATTTATATAATATAATTAATTAAAATAAT 348958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455631715200