Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq6 143 4e-29 seq11 136 6e-27 >seq6 Length=916956 Score = 143 bits (158), Expect = 4e-29 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || |||||||| ||||||||||| || ||||| || || Sbjct 466647 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 466588 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || ||||||||||||||||| ||||| |||||||| ||||| || || Sbjct 466587 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 466528 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||||||| ||| || Sbjct 466527 ATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 466468 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || |||||||| || ||||||||||| | ||| |||||||| Sbjct 466467 TCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 Score = 138 bits (152), Expect = 2e-27 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || || ||||| ||||||||||| || || ||||| || Sbjct 466191 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGAT 466132 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||||||||| ||||| |||||||| ||||| || ||| Sbjct 466131 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGA 466072 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||| || ||| || Sbjct 466071 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACA 466012 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || |||||||| || ||||| ||||| | ||| || ||||| Sbjct 466011 TCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 465965 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || || |||||||| |||||||| || || || || || Sbjct 466419 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 466360 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| |||||||||||||| |||||||| |||||||| ||||| |||||| Sbjct 466359 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 466300 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 466299 ATACCTTCTTTATCTTG 466283 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || || ||||| ||||||||||| || ||||| || || Sbjct 465963 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 465904 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||||||| |||||||||||||| |||||||| ||||| || || Sbjct 465903 AATGTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGGG 465844 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 465843 ATACCTTCTTTATCTTG 465827 >seq11 Length=1720574 Score = 136 bits (150), Expect = 6e-27 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || |||||||||||| || || ||||| || ||||| || || | ||||| | ||| Sbjct 1496419 TATTACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATC 1496478 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||| Sbjct 1496479 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 1496538 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| ||||| || ||| || || || |||||||| Sbjct 1496539 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 1496598 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 ||| || ||||||||||| | || ||||||||||| Sbjct 1496599 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1496634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526037530880