Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq10 284 1e-71 >seq10 Length=1634725 Score = 284 bits (314), Expect = 1e-71 Identities = 627/919 (68%), Gaps = 37/919 (4%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT--T 15943 |||||||||| | | || |||||| || | |||||| | | | |||||| || | | Sbjct 1455838 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAAC--ACCTGAT 1455781 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || |||||||||||||||||||||||||||||||| ||| || || Sbjct 1455780 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 1455721 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAAC 16060 ||||| || ||| |||||||||||| | ||| ||| || || ||| || Sbjct 1455720 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAA- 1455662 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTAT 16119 ||||| ||| || |||||||| || || || ||| || || | |||||||| || Sbjct 1455661 --TAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAAT 1455605 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| | | ||| | | ||| | ||| | |||||| | ||| ||||| | | Sbjct 1455604 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 1455545 Query 16180 TATATCTCTTACTACACTATT----TAACGGAGGGTTTAATAAGTGTTTAAACATTATAC 16235 ||||| | || || || || ||| | | || ||| || | |||| || Sbjct 1455544 TATATTTTGAACAAC-CTCTTCTGGTAATTTATTTTCCAACAAGC---TATAAATTAAAC 1455489 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 || |||||| || |||||||| || ||||| || || || || |||||| | || Sbjct 1455488 AATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAAC 1455429 Query 16296 C-TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 | || ||| | | ||||||||| ||||||||| || ||| ||| ||| ||| Sbjct 1455428 CATGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAAT 1455370 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG--TTC-TAtttttactt 16411 || ||||| || ||| || || | || ||| | | | ||| ||| || Sbjct 1455369 ATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---- 1455314 Query 16412 tctatccattttttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTGC 16470 ||||||||| ||||| |||||| || |||| | | | || || || || || Sbjct 1455313 --TATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGC 1455257 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 || |||||||| | | ||||| ||| ||||||| |||| |||| ||||||||| Sbjct 1455256 ATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATA 1455197 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 |||| || || ||||| || | ||||| |||||| ||||||| | | ||||| Sbjct 1455196 GGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAAT 1455137 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649 |||||||||||| ||||| || || ||||| ||||| ||||||||||| |||| Sbjct 1455136 TATTTGTACTTC-TCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAG 1455078 Query 16650 CTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC-GTTATCTGAAAGTTTTAAC 16708 |||||||||| || || | ||||| ||||||| |||||| ||| | || |||| | Sbjct 1455077 CTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCA- 1455019 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 |||| ||||| |||||||||| | ||||| |||||||||| || || |||| Sbjct 1455018 AAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCT 1454959 Query 16769 TTTTTATACATTTTCCATA 16787 |||||||| | ||||||| Sbjct 1454958 TTTTTATAAAAATTCCATA 1454940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511774525400