Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7 206 2e-48 >seq7 Length=1169068 Score = 206 bits (228), Expect = 2e-48 Identities = 318/451 (71%), Gaps = 2/451 (0%) Strand=Plus/Plus Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280 || || ||||| | || |||||||||||||| || ||||| ||||||||| || ||| Sbjct 995430 GACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGATATG 995489 Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT-AA 20339 | | ||||| | |||| || ||||| ||| ||||| |||| ||||||||| || Sbjct 995490 CATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATTTAATTAAA 995549 Query 20340 AACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTT 20399 ||||| || | | | ||| ||||||||||||| || ||||| | |||||| | | Sbjct 995550 AACGATCCGACATG-TAGACGAATTATTTTATGTGCATGGAATGTAAAAGATTTAGATCA 995608 Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 |||||| || ||||| |||||||| |||| |||||||| ||| | || |||| || Sbjct 995609 AATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTATC 995668 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||| ||||||||| |||| |||| | || || |||||||| ||||||||||| Sbjct 995669 ATGTATTATGTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAATATTGCTTC 995728 Query 20520 TTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGT 20579 ||| | | |||| |||||||| ||||| || ||||| || | | ||| || | Sbjct 995729 CTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAATTTAT 995788 Query 20580 CCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTT 20639 || | ||| | || ||| |||| ||||||| | ||| |||||| | ||||| Sbjct 995789 ACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGCTTAAAAGTCCAGTT 995848 Query 20640 AACACGACAACCAAAACAATTCCCAACTCTT 20670 || || ||| | | ||||| |||||| Sbjct 995849 AAATAGAACACCCTATCCTTTCCCTACTCTT 995879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183810262855