Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq10 232 6e-56 >seq10 Length=1634725 Score = 232 bits (256), Expect = 6e-56 Identities = 623/934 (67%), Gaps = 29/934 (3%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1455837 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1455778 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 1455777 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1455718 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 14032 || || |||||||||| |||| || ||||| ||||||| |||||||| Sbjct 1455717 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATA-- 1455660 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 14091 ||| ||| |||| || ||||| ||||||||||| || || ||||||| || |||| Sbjct 1455659 -ATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1455602 Query 14092 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | ||| | | ||| || |||| | |||||| || || || || | | Sbjct 1455601 ATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1455543 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACG 14207 || | || || || | | | | |||||| | | | | | |||||||||| Sbjct 1455542 TATTTTGAACAACCTCTTCTG--GTAATTTATTTTCCAACAAGCT-ATAAATTAAACAAT 1455486 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 14266 |||||| || | || |||||||||||||| | ||| || ||||||||| || | Sbjct 1455485 TAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCAT 1455426 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 | || || | ||||||| ||||||||||||||| || ||| ||| |||||| Sbjct 1455425 GTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATT 1455367 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 || || || ||| |||| | || ||| |||| || | | || |||| Sbjct 1455366 CCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATC 1455310 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 ||||| |||||| | ||| ||||| || || |||||||||||| |||| Sbjct 1455309 CATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAAT 1455250 Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 |||| | ||||||| | ||| || ||||||| | ||| ||||| ||||| Sbjct 1455249 AAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCA 1455190 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 |||||||| ||||| | |||||| |||||| ||||||| | | ||||| |||| Sbjct 1455189 GAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGT 1455130 Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626 || ||| ||||| | || |||||||| ||||| |||||||||||||||||| Sbjct 1455129 ACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAA 1455070 Query 14627 AATGCCA--ATATGTTTTTAATAAAGTATTGC-TCTTCATTGCTGAGTTTTTTCCAA-TC 14682 ||||| | | ||||||| | || || || | | | |||| | | |||||| || || Sbjct 1455069 AATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATT--TAA--TTTTTCAAAGTC 1455014 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||| Sbjct 1455013 TTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTT 1454954 Query 14743 ATACATTACCCATATTTCTTTATATAATATAGGA 14776 ||| | ||||| ||| ||| | |||||| Sbjct 1454953 ATAAAAATTCCATACTTCAGGATACATAATAGGA 1454920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345364856520