Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6 125 5e-24 seq11 123 2e-23 >seq6 Length=916956 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||| | || | ||| | || ||||||||||||||||||||||| | Sbjct 466419 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 466360 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| ||| |||||| |||||||| || ||| | || | |||||||||||| || Sbjct 466359 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 466300 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||||| | || || || | | ||| || ||| ||||| Sbjct 466299 ATACCTTCTTTATCTTGAATTT-TAGCTTTAACATTTTCAATGGTATCAGATGGCTCAAC 466241 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| |||| ||||| || |||||||| ||||| ||||| Sbjct 466240 ATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||||||||| ||||| | | |||| ||| ||||| |||||||| || Sbjct 466617 GTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCA 466558 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || | || | |||||||||||| || | ||||| ||||| ||||| | || || Sbjct 466557 GCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTT-TGGCTTT 466499 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || || || |||| || || |||| ||||| ||||| Sbjct 466498 AACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGT 466439 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||| ||||||||||| Sbjct 466438 TTTTACGAAAATTTGCAT 466421 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||| | || | ||| | || |||||||||||||||||||| || | Sbjct 466191 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGAT 466132 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | ||| || |||||||| || || | || | |||||||||||| || Sbjct 466131 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGA 466072 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||||| | || || || | | ||| ||| ||| || || Sbjct 466071 ATACCTTCTTTATCTTGAATTT-TAGCTTTAACATTTTCAATAGTATCAGATGGTTCAAC 466013 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || |||| ||||| || |||||||| ||||| ||||| Sbjct 466012 ATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 465965 >seq11 Length=1720574 Score = 123 bits (136), Expect = 2e-23 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||||| |||||||||||||| ||||| | | |||| | | |||||| Sbjct 1496422 TACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTC 1496481 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||| || || | || | |||||||||||| ||| | ||||| ||||| Sbjct 1496482 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1496541 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| |||| || || | | ||| || ||| || || |||| ||||| ||| Sbjct 1496542 GATTT-TTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 1496600 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT--TAAAC 18333 | ||||| |||||||||||||| ||||||||||| ||||| Sbjct 1496601 TTCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAAC 1496641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343819693055