Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 seq11 86.0 6e-12 >seq6 Length=916956 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| || | || || ||||| || || | || |||||||| || Sbjct 466421 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 466480 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| || || ||||| | || || || || Sbjct 466481 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 466540 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | |||| |||||||| ||||| || |||||| || || || | | || ||||| Sbjct 466541 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTA-GAACATTATCTGACTATAA 466599 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||||||||| || | ||| | || | ||| | || || ||| Sbjct 466600 CATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGGT 466648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||||||||| ||| | || || ||||| || || | || |||||||| || Sbjct 465965 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATTACTCTTGATGTTGAACCATCT 466024 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| || || ||||| | || || || || Sbjct 466025 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 466084 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | |||| |||||||| ||||| || || || | | || | | | ||||| || Sbjct 466085 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGA-TGGAAGAACACTATCTGATTACAA 466143 Query 31372 CATTCAAAAAGAATCGAC 31389 ||||||||||||||| || Sbjct 466144 CATTCAAAAAGAATCTAC 466161 >seq11 Length=1720574 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| || ||||| || | || || ||||| ||||| | || |||||||| Sbjct 1496634 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1496575 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || ||| | ||| || || ||||| | || || || Sbjct 1496574 TCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 1496515 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTA 31368 || || | |||| |||||||| ||||| || ||||| | | || || | | || || Sbjct 1496514 CAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGA-TGGAAGAACATTATCTGACTA 1496456 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||||||||||||||| || || | ||| ||||| Sbjct 1496455 TAACATTCAAAAAGAGTCAACCTTACATTTGGTA 1496422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766182688880