Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 385 6e-102 seq10 178 2e-39 >seq6 Length=916956 Score = 385 bits (426), Expect = 6e-102 Identities = 968/1458 (66%), Gaps = 29/1458 (2%) Strand=Plus/Minus Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | ||||| Sbjct 509181 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 509122 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62540 || || ||||||||||| | | | | |||||| | |||| | | || ||||| | | Sbjct 509121 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 509062 Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAA---CANNNNNNNNNNNATATTGT 62597 |||| ||||||| |||| | ||| || | ||||| Sbjct 509061 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 509002 Query 62598 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCC--TTCCTTCTCA 62654 | || || | || || | || | ||| ||||| ||||||||||| || ||| | Sbjct 509001 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 508945 Query 62655 GCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGAT-CTTCTTATT 62713 || | || | | | ||||| ||| | ||||| || |||||||| || ||||| ||| Sbjct 508944 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 508886 Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62773 || |||| ||||| ||| ||||||| |||| || ||||| | || ||||| Sbjct 508885 TAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 508826 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 |||||| || || || || |||||||||||||| ||||| || |||| |||||| || Sbjct 508825 TCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAAC 508766 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62893 ||||||||||| | || |||||||||| | |||||| ||| | ||| | ||| Sbjct 508765 TGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 508706 Query 62894 CTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGCAAC 62947 | | ||| ||||| ||| | ||||| ||||| || ||||||| Sbjct 508705 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAAT 508646 Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 || || | |||||| || ||||| |||| || | ||||| || || ||| || Sbjct 508645 GGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACA 508586 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 | |||||| || || || ||||||||||||| |||||| || ||||| ||||| Sbjct 508585 TAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATC 508526 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||||| | || |||| ||||||||| || || || || || || ||| | Sbjct 508525 TTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAA 508466 Query 63128 GACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGAGTATACAA 63184 || | || | || | ||| | || ||||| ||||||| ||||| || Sbjct 508465 ATCTTGTGC---AAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAA 508409 Query 63185 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAA 63244 | ||| || || || ||||| | || | |||||||| | || ||||| || Sbjct 508408 TTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATTAA 508349 Query 63245 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304 | ||| | | ||||| |||| ||||||||| | |||||| | ||||| ||| Sbjct 508348 AGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 508289 Query 63305 AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63364 ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 508288 AAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 508229 Query 63365 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63424 | |||||| |||||||| ||||| | |||| || | | || | ||| ||| Sbjct 508228 AAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCC 508169 Query 63425 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63484 || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||| || Sbjct 508168 ACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATT 508109 Query 63485 TGATATACCATTGGTACCGGAGATAT-AGCCTCCACTG-GCACGAATATTACTAATTGAT 63542 |||||||||||| || || ||| | || | || || | ||||| | | Sbjct 508108 TGATATACCATTAGTTCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAGCC 508051 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | || Sbjct 508050 ACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATA 507991 Query 63603 CCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 |||||||| |||| ||| || ||| || ||| || |||||||||| | | | Sbjct 507990 CCTTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGG 507932 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||||||| ||||||||| ||||||| ||| || ||||| |||||| || | || || Sbjct 507931 TGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATG 507872 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || || | ||| || | ||| | ||| ||||||| | || | |||||| Sbjct 507871 ATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAA 507812 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 | |||||||| | ||||| |||||| || || || || ||||| || |||| || Sbjct 507811 TAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAA 507752 Query 63842 AGTTTTAAAACCAAAATA 63859 |||||||| |||||||| Sbjct 507751 TGTTTTAAATCCAAAATA 507734 >seq10 Length=1634725 Score = 178 bits (196), Expect = 2e-39 Identities = 367/541 (68%), Gaps = 4/541 (1%) Strand=Plus/Minus Query 33603 CCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33662 || || ||||||||||| ||||| ||| ||| || | || | | | | ||| Sbjct 1455468 CCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTTTGTTTT 1455409 Query 33663 TTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 |||| ||||||||| | | || ||| ||| || |||||||| || ||| Sbjct 1455408 TTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCATTA 1455349 Query 33723 GCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | || ||| || || || | | |||| |||||| || ||||| || Sbjct 1455348 GCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATAATGCT 1455289 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 33842 || ||||||| || || |||| || |||| ||| | || | | || || | Sbjct 1455288 TTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCA 1455229 Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || ||| |||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 1455228 TCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCT 1455169 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || ||||| | || || | | || || | || || |||||| | ||||| | || Sbjct 1455168 ATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATT-TACT 1455110 Query 33963 -GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 ||||||||||| |||||||||||||| ||||||||||| || | ||||||||||| Sbjct 1455109 AGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTAT 1455050 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATCCA 34080 ||||| |||||| | | ||| ||| ||| || || || | ||| | |||| ||| | Sbjct 1455049 AAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTA 1454991 Query 34081 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 34140 |||||| | ||||||||||| ||||| || |||||||| | |||||| | ||| ||| Sbjct 1454990 TTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCAGGAT 1454931 Query 34141 A 34141 | Sbjct 1454930 A 1454930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817292963920