Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 609 2e-169 seq10 288 9e-73 >seq6 Length=916956 Score = 609 bits (674), Expect = 2e-169 Identities = 1196/1738 (69%), Gaps = 48/1738 (3%) Strand=Plus/Minus Query 36958 TCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGT 37017 || || ||||| || | |||| |||||| || |||||||| |||||||| | | | Sbjct 509397 TCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCCCAAACGGTTTTATACAACTCT 509338 Query 37018 TTTATATTATCTGGTAAATC--TAA-ATGTTGAATAGAACCATTATGTAACAC-AATTGT 37073 || | | | |||| || ||| || ||||| | |||||||| | |||||| Sbjct 509337 TTCAAGTCACTAGGTATTTCGCTAATATATTGAACACTTCCATTATGGGCAATTAATTGT 509278 Query 37074 ATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATT 37133 | || || || | || ||| | | |||| | || ||| | || | || ||||| Sbjct 509277 TGT-TTCATATCTTCATCCCAAAGACCTCTATCAAAAAGATCTTTTAACAAATGAGGATT 509219 Query 37134 TACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTC 37193 ||||| || || ||| ||| || | ||| ||| || || || ||||||||||| Sbjct 509218 AACAACAAAGAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGTATATGGTTC 509159 Query 37194 AATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 || ||| |||||||| | ||| ||||| || || || || || ||||| ||||||| || Sbjct 509158 AAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAAGCTGTTGGCATAGGTGCTAAAAG 509099 Query 37254 AAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313 ||| |||||| ||||| ||| || | ||| | ||||||| | || ||||||||| | Sbjct 509098 AAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTTTTTAATAAATCCCAATCCCA-AT 509040 Query 37314 ATCTGTTGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAG 37369 || | || | |||| | ||||||||| |||||| || |||| || |||||| Sbjct 509039 ATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGGCTTGCTGGAC 508980 Query 37370 AATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGA---TTCTA 37426 | | | ||||| ||||| ||||| | || || | ||| ||| ||| ||||| Sbjct 508979 TACCTTGATATGATTCATATGGTCCACTTACTTGTGCCAATTC--AAC-AGACATTTCTA 508923 Query 37427 GTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTAT 37486 || |||||||| || ||||| || ||| | |||||||| ||| |||||||| | Sbjct 508922 AAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAGCTTCTTCAGATT 508863 Query 37487 CGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGG 37546 | ||| ||| | || | ||||| ||| || || || || || || || || || | Sbjct 508862 CATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAG 508803 Query 37547 GTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTA 37606 |||||||| | ||||| ||||| || |||| | |||||||||||||| | || || | Sbjct 508802 GTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATTTCTTTCAATAA 508743 Query 37607 TTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT-AAAT 37665 |||||| || |||| || | ||||| ||||| || | | || | || || |||| Sbjct 508742 TTTTATCTAAATTTCTAGTAATAATTTTAGTAAT-ATCATATAATTTTTTAAAATTAAAT 508684 Query 37666 ACGTTATT------ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 | || || || ||||||||| | || | ||| || ||| |||||| ||||| Sbjct 508683 TCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAATTACAAACAGCT 508624 Query 37720 ACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 |||||||| || | || ||| ||||| || ||| | |||||| || ||||||| Sbjct 508623 ACTTCATCAG-GTGATGTATATTCAATAATTTCACAACATAAATTACTGCATTTAATTGT 508565 Query 37779 TCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGT 37838 ||| ||||| ||||||| ||||| |||||| | ||||||||||| ||||| || Sbjct 508564 TCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACATATATGGTAC 508505 Query 37839 TCCTTGTTCTATTTGAGCCTCGATA-ATAGATTTCCATAAACTTCTTGCTTTAACGATCG 37897 || ||||||||| || | | | |||| ||||||| ||||| | || || | Sbjct 508504 ACCAGTTTCTATTTG-GCTTTGTAATATAGCAAACCATAAA--TCTTG-TGCAAGAATTG 508449 Query 37898 CTTTAAttt-----ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCC 37952 ||| || ||||||| |||||||| | |||||||||| | ||| || | || Sbjct 508448 TTTTTTTTCCAAGATTTTCTTC--TTCGTATTTTGTATATAATTTTTCAAATTCTTCACC 508391 Query 37953 CCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA-TTCTTCATCTT 38011 ||| || | ||| |||||||||||| || ||||||| || ||| ||||| || || Sbjct 508390 CCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATTAAAGTCCAGTTCTT-ATTTT 508332 Query 38012 TTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTC 38071 | ||| | || ||||||||||||||||||||| | ||| ||||||||| | || Sbjct 508331 CCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTC 508272 Query 38072 TATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCC 38131 | ||||||| || || ||| |||||||| || ||| || || ||||| | |||| Sbjct 508271 TCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCC 508212 Query 38132 ATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATC 38191 ||||||| | ||| | | | | ||| |||||| | || || |||| | ||||| Sbjct 508211 ATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATC 508152 Query 38192 TAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC 38251 | |||| | |||| | | ||||||||| || |||| |||||| ||| | || || | | Sbjct 508151 TTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCATTAGTTC 508092 Query 38252 CGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCAT 38311 | || |||| | | ||||| |||| || | || ||||| || ||||| | Sbjct 508091 CTCTGATGTAAGAATTTTGAGCTCTAATATCTTGTACAGCCACACCTATACCTCCTGC-T 508033 Query 38312 GTTTTGATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCC 38370 ||||| || | || || ||||| ||||| || ||||||||||||||||| ||| Sbjct 508032 GTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAATCAGAT 507973 Query 38371 TTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAAT 38430 || |||| || || ||| || ||||||||| || ||| ||||| | ||||||||| Sbjct 507972 TTCATTGATAATAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTAAATAAT 507913 Query 38431 GTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCA 38490 ||||||| ||||| | || |||||| |||| ||| ||| ||||||| | | Sbjct 507912 GTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTCTAAAGCCTTT 507853 Query 38491 TCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 || | |||| | || || |||| |||||| ||||||| | ||| || || | ||| Sbjct 507852 TCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGAGGACGTTCA 507793 Query 38551 ATTATTTTATTATT-CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 || ||||||||||| | ||| || || || ||||||||||||| | ||||||||| Sbjct 507792 ATAATTTTATTATTAATACGTAA-TAAGTAAGACCTTTCTAATGTTTTAAATCCAAAATA 507734 Query 38610 ACTATA--TGAATAATCTCTATCGTATGCTATTACATTATCGATTATATCTCTATGTT 38665 | ||| ||| ||||||| || ||||| | |||| | |||| |||||| Sbjct 507733 ATCATAATTGA--AATCTCTTGTATAATCTATTTCTTTATTTAAACGATCTTTATGTT 507678 >seq10 Length=1634725 Score = 288 bits (318), Expect = 9e-73 Identities = 592/867 (68%), Gaps = 14/867 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || ||||| ||| || ||||| || || |||| || ||||| | Sbjct 1455780 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 1455721 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||||| ||||| | | || ||| ||||| |||||||| | |||| Sbjct 1455720 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAAT 1455661 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||| ||| || || ||||| || || |||||||| | | ||||||| || || | | Sbjct 1455660 AATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATTAAA 1455601 Query 11519 TCCACCGGAATAGCAACTGTCAAA-AACTCCT-TTTCTATATTAACCGCATCAATGATTA 11576 || || | || | | |||| || | | |||||| | ||| || || | | || Sbjct 1455600 TCACAAGGTAAAG--ATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1455543 Query 11577 TCGACGTT--ATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGC 11634 | | || | ||| || | | | | || | || || | |||||||| Sbjct 1455542 T--ATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCTATAAATTAAACAATT 1455485 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||| ||||| ||||| |||||||| || | ||||||| ||||||||| || | Sbjct 1455484 AAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATG 1455425 Query 11695 CA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 | | || | ||||||| | ||||||||| ||| ||| ||| ||| ||||||| Sbjct 1455424 TAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTC 1455366 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATT 11813 | || ||| |||| ||||| | |||||| || | || | | |||||||| Sbjct 1455365 CTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATT 1455306 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 | ||||| ||||| ||||||| | || |||| ||||| | |||||||| Sbjct 1455305 TAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAAT 1455246 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 | | | ||| | | ||| || | ||| |||| |||||||||||||| |||| || | Sbjct 1455245 TTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGT 1455186 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT-GTACA 11992 | |||||||| | |||||||||||| |||| |||| | || || | | | |||| Sbjct 1455185 GTATATTTTCAACAGCTATTTGAAAAGCATA-AAACTTTTTGGCTTCAATTATTTGTACT 1455127 Query 11993 TCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051 || | ||||| || | |||||||| || ||| || |||||||||| ||||||||| Sbjct 1455126 TCT-CTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAA 1455068 Query 12052 TGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAA 12111 |||||| | |||||||||||| | |||||| | | | ||||||| || | || | || Sbjct 1455067 TGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAA 1455008 Query 12112 ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACAT 12171 ||| |||||||||||| ||||||| | |||||||| ||| | | || |||||| | Sbjct 1455007 ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAA 1454948 Query 12172 TTTCCAGATATCATGATACTTAATAGG 12198 ||||| | ||| ||||| ||||||| Sbjct 1454947 ATTCCATACTTCAGGATACATAATAGG 1454921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524571594160