Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 376 3e-99 seq10 190 3e-43 >seq6 Length=916956 Score = 376 bits (416), Expect = 3e-99 Identities = 967/1461 (66%), Gaps = 35/1461 (2%) Strand=Plus/Minus Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | ||||| Sbjct 509181 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 509122 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 65333 || || ||||||||||| | | | | |||||| | |||| | | || ||||| | | Sbjct 509121 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 509062 Query 65334 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 65390 |||| ||||||| |||| | ||| | |||| Sbjct 509061 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 509002 Query 65391 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 65447 | || || | || || | || | ||| ||||| || |||||||| || ||| | Sbjct 509001 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 508945 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 65506 || | |||| | | ||||| ||| | ||||| || ||||| || || ||||| ||| Sbjct 508944 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 508886 Query 65507 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 508885 TAATTCTTTAGCTTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 508828 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 |||||||| || || || || |||||||||||||| ||||| || |||| |||||| | Sbjct 508827 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 508768 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | ||||||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 508767 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 508708 Query 65685 TCCTTCAGTTTGAGAAAATCAAA-----TCGCTCATCTAT-TACAAACATGTTCAATGCA 65738 || | | ||| ||||| ||| | | ||||| ||||| || |||||| Sbjct 508707 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 508648 Query 65739 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 65798 | || || | ||||||||| ||||| |||| || | ||||| || || ||| Sbjct 508647 ATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 508588 Query 65799 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 65858 || | |||||| || || || ||||||||||||| |||||| || ||||| ||| Sbjct 508587 CATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCA 508528 Query 65859 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 65918 || ||||| | || |||| ||||||||| || || || || || || ||| Sbjct 508527 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 508468 Query 65919 ACGACTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATAC 65975 | || | || | || | ||| | || |||||| ||||||| |||||| Sbjct 508467 AAATCTTGTGC---AAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATAT 508411 Query 65976 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 66035 ||| ||| || || || ||||| | || || |||||||| | || ||||| Sbjct 508410 AATTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATT 508351 Query 66036 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 66095 || | ||| | | ||||| |||| ||||||||| | |||||| | ||||| ||| Sbjct 508350 AAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCA 508291 Query 66096 ATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 66155 ||||||||| | | ||| ||| || || || ||| ||| | | ||| | || Sbjct 508290 TAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAAT 508231 Query 66156 GCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 66215 | | |||||| ||||||| ||||| | |||| || | | || | ||| | Sbjct 508230 TCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCT 508171 Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || || ||||||| ||||| || || | |||| ||||||| ||||| || | | |||| Sbjct 508170 CCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCA 508111 Query 66276 TTGGATGTACCATTGGTCCCGGAGAT---ATAGCTTCCACTTGCACGAATATTACTAATT 66332 || ||| ||||||| || || ||| | | || | || | ||||| | Sbjct 508110 TTTGATATACCATTAGTTCCTCTGATGTAAGAATTTTGA---GCTCTAATATCTTGTACA 508054 Query 66333 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 66392 | | |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | Sbjct 508053 GCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAAT 507994 Query 66393 ATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 66451 || || ||||| |||| ||| || ||| || ||| || |||||||||| | | Sbjct 507993 ATACCTTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCT 507935 Query 66452 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 66511 ||||||| ||||||||| ||||||| ||| || ||||| |||||| || | || Sbjct 507934 TGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAA 507875 Query 66512 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 66571 || || || || | ||| || | ||| | ||| ||||||| | || | ||| Sbjct 507874 ATGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCAT 507815 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 ||| | |||||||| | ||||| || || || || || || ||||| || |||| Sbjct 507814 TAATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTC 507755 Query 66632 CAAAGTTTTAAAACCAAAATA 66652 || |||||||| |||||||| Sbjct 507754 TAATGTTTTAAATCCAAAATA 507734 >seq10 Length=1634725 Score = 190 bits (210), Expect = 3e-43 Identities = 379/556 (68%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| ||||| || || ||||||||||| ||||| || ||| || | || | Sbjct 1455483 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 1455424 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 36283 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1455423 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1455364 Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 36343 || || ||| || | || ||| || || || | | |||| |||||| || Sbjct 1455363 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTA 1455304 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 36403 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 1455303 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1455244 Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463 | | || || ||| ||| ||| ||||||| || | |||||| |||| || || Sbjct 1455243 AATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 1455184 Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||||| || |||||||| | || || | | || || | || ||||||||| Sbjct 1455183 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCT 1455124 Query 36524 GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | ||||| | || ||||||||||| |||||||| ||||| ||||||||||| || Sbjct 1455123 CTTAAAAATT-TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1455065 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA-TCATTGATAT 36641 | |||||||||||||||| |||||| ||| ||| ||| ||| || || || | || Sbjct 1455064 TAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1455006 Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 | | |||| ||| | |||||| | ||||||||||| ||||| || |||||||| | || Sbjct 1455005 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1454946 Query 36702 TCCAGATGTCATGATA 36717 |||| | ||| |||| Sbjct 1454945 TCCATACTTCAGGATA 1454930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172479140760