Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 468 7e-127 seq10 187 4e-42 >seq6 Length=916956 Score = 468 bits (518), Expect = 7e-127 Identities = 991/1459 (68%), Gaps = 31/1459 (2%) Strand=Plus/Minus Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152 ||||| ||||| ||||||||||| | |||||||||||||| |||||||| | ||||| Sbjct 509181 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 509122 Query 79153 GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCT 79212 || |||||||||||||| | | | | |||||| | |||| | || ||||| | | Sbjct 509121 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 509062 Query 79213 TTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAA---CATTCCAAAGATCATATTGT 79269 |||| | |||||||||||| | | || ||||||| | |||| ||||| Sbjct 509061 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 509002 Query 79270 AGAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCC--TTCCTTTTCG 79326 | || || | || || | | | | || |||| |||||| ||||| || ||| | Sbjct 509001 AATATTCCTTGGCTTGCTGGACTACCTTGA-TATGATTCATATGGTCCACTTACTTGT-- 508945 Query 79327 GCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAAT-CTTCTTATT 79385 || |||||| | | ||||| || | ||||| || ||||| || || ||||| ||| Sbjct 508944 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 508886 Query 79386 GAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 79445 | |||| |||||| ||| ||||||| |||| || ||||| | |||||||| Sbjct 508885 TAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 508826 Query 79446 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 79505 |||||| || || || || |||||||||||||| ||||| || |||| |||||| || Sbjct 508825 TCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAAC 508766 Query 79506 AGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGA-CCACAT 79564 ||||||||||| | || |||||||||| | ||| || | || || ||| | | || Sbjct 508765 TGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATAT 508707 Query 79565 CCTTTAGTTTGAGAAAATCAAA-----TCGTCCATCTAT-TACAAACATGTTCAACGCGA 79618 | | || ||| ||||| ||| | | ||||| ||||| || || || | Sbjct 508706 CATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAA 508647 Query 79619 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGC 79678 || || | ||||||||| ||||| |||| || | ||||| || |||||| | Sbjct 508646 TGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAAC 508587 Query 79679 AGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 79738 | | ||||| || ||||| ||||||||||||| |||||| || ||||| |||| Sbjct 508586 ATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCAT 508527 Query 79739 CCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 79798 | ||||| | || | || ||||||||| || || || || || || ||| | Sbjct 508526 CTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 508467 Query 79799 CGACTCGAGCCTTTATTATAGACTTGTATC---TCTTTTCTCTTTCGTATTGTGTATATA 79855 || | || | || | || | || |||||| |||||||| |||||||| Sbjct 508466 AATCTTGTGC---AAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATA 508410 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915 || ||| || || || ||||| || ||| || |||||||||| ||| ||||| | Sbjct 508409 ATTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATTA 508350 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 | | ||| | || |||||||||| ||||||||| | |||||| | ||||| ||| Sbjct 508349 AAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCAT 508290 Query 79976 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035 ||||| ||| | | ||| || || || || ||| ||| | | ||| | || Sbjct 508289 AAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATT 508230 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 | | |||||| |||||||| ||||| | |||| || | | || || ||| || Sbjct 508229 CAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTC 508170 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 | || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||||| Sbjct 508169 CACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCAT 508110 Query 80156 TGGATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGA 80213 | ||| ||||||| || || ||| | || | || || | ||||| | | Sbjct 508109 TTGATATACCATTAGTTCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAGC 508052 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | || Sbjct 508051 CACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATAT 507992 Query 80274 GCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 || ||||| |||| ||| || ||| || ||| || |||||||||| | | Sbjct 507991 ACCTTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTG 507933 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 ||||||| ||||||||| ||||||| ||| || ||||| |||||| |||| || || Sbjct 507932 GTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAAT 507873 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 || || || | ||| ||| | ||| | ||| ||||||| | || | ||||| Sbjct 507872 GATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTA 507813 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 | | |||||||| | ||||| || || ||||| || || |||||||| |||| | Sbjct 507812 ATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTA 507753 Query 80513 AAGTTTTAAAACCAAAATA 80531 | |||||||| |||||||| Sbjct 507752 ATGTTTTAAATCCAAAATA 507734 >seq10 Length=1634725 Score = 187 bits (206), Expect = 4e-42 Identities = 336/485 (69%), Gaps = 6/485 (1%) Strand=Plus/Minus Query 50038 TTTTTAAGCCAAAATATGGACGCAAATGAC--CCAGAAAAGAAGATTCCTTCTACTGCGG 50095 ||||||| ||||||||| | | |||| || ||| ||| || |||||||| || | Sbjct 1455411 TTTTTAAACCAAAATATTG-CACAAAA-ACTTCCACTAAATAATATTCCTTCGACACATG 1455354 Query 50096 CAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAAT 50155 || || |||| ||| || || || | | |||| |||||| || ||||| Sbjct 1455353 CATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATA 1455294 Query 50156 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCAT 50215 || || ||||||| || || |||| || |||| ||| | || | | || | Sbjct 1455293 ATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTT 1455234 Query 50216 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 50275 | ||| ||| |||| |||| || || | |||||| |||| || || || ||||||| Sbjct 1455233 TCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAA 1455174 Query 50276 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATC 50335 || || ||||| | || || | | || || | || || |||||| | ||||| Sbjct 1455173 CAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATT 1455114 Query 50336 GTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 50395 |||||||||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 1455113 TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTT 1455054 Query 50396 TTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATA 50454 |||||||||||||||| || ||| ||| ||| || || || | ||| | |||| | Sbjct 1455053 TTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAA 1454995 Query 50455 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 50514 |||| |||||| | ||||||||||| ||||| || |||||||| | |||||| | ||| Sbjct 1454994 TCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCA 1454935 Query 50515 TGATA 50519 |||| Sbjct 1454934 GGATA 1454930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268449843960