Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq10 255 6e-63 >seq10 Length=1634725 Score = 255 bits (282), Expect = 6e-63 Identities = 628/934 (67%), Gaps = 29/934 (3%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1455837 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1455778 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 1455777 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1455718 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 13700 || || |||||||||| |||| || ||||| ||||||| |||||||| Sbjct 1455717 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATA-- 1455660 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 13759 ||| |||||||| ||| ||||| ||||||||||| || || ||||||| || |||| Sbjct 1455659 -ATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1455602 Query 13760 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||| | | ||| || |||| | |||||| || || ||||| | | Sbjct 1455601 ATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1455543 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACG 13875 || || || || ||| | | | | |||||| | | | | | |||||||||| Sbjct 1455542 TATTTTGAACAACCTCTTCTG--GTAATTTATTTTCCAACAAGCT-ATAAATTAAACAAT 1455486 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 13934 |||||| || | || |||||||||||||| | ||| || ||||||||| || | Sbjct 1455485 TAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCAT 1455426 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 | || || | ||||||| ||||||||||||||| ||| || ||| |||||| Sbjct 1455425 GTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATT 1455367 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || || || ||| |||| | || ||| |||| || | | || |||| Sbjct 1455366 CCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATC 1455310 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 ||||| |||||| | ||| ||||| || || |||||||||||| |||| Sbjct 1455309 CATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAAT 1455250 Query 14115 AAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 |||| | ||||||| | ||| || ||||||| | ||| ||||| ||||| Sbjct 1455249 AAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCA 1455190 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 |||||||| ||||| | |||||| |||||| ||||||| | | ||||| |||| Sbjct 1455189 GAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGT 1455130 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 ||||| ||||| | || |||||||| ||||| |||||||||||||||||| Sbjct 1455129 ACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAA 1455070 Query 14295 AATGCCA--ATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAA-TC 14350 ||||| | | ||||||| ||||| | || || || | || | |||||| || || Sbjct 1455069 AATGCTAGCACATGTTTT--ATAAAATGTTTTTCATTTACATTTAA--TTTTTCAAAGTC 1455014 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||| Sbjct 1455013 TTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTT 1454954 Query 14411 ATACATTACCCATATTTCTTTATATAATATAGGA 14444 ||| | ||||| ||| ||| | |||||| Sbjct 1454953 ATAAAAATTCCATACTTCAGGATACATAATAGGA 1454920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727766132600