Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq10 221 1e-52 >seq10 Length=1634725 Score = 221 bits (244), Expect = 1e-52 Identities = 621/932 (67%), Gaps = 25/932 (3%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1455837 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1455778 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || |||||| |||||||| || || ||||| |||| | ||||| ||| Sbjct 1455777 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1455718 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || || ||||||||| |||| || ||||| ||||||| | ||||||| Sbjct 1455717 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATAAT 1455658 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGTTT 13550 | |||||||| ||| ||||| ||||||||||| || || ||||||| || |||| | Sbjct 1455657 CGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAAATC 1455599 Query 13551 TACAGGAATTATATTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||| | | ||| || |||| | |||||| || || || || | ||| Sbjct 1455598 ACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATAT 1455540 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACGCAA 13666 | | || || || | | | | |||||| | | | | | |||||||||| || Sbjct 1455539 TTTGAACAACCTCTTCTG--GTAATTTATTTTCCAACAAGCT-ATAAATTAAACAATTAA 1455483 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGC 13725 |||| || | || |||||||||||||| | ||| || ||||||||| || || Sbjct 1455482 AATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTA 1455423 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || || | ||||||| ||||||||||||||| || ||| ||| |||||||| Sbjct 1455422 ATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1455364 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCAT 13845 || || ||| |||| | || ||| |||| || | | | | || ||||||| Sbjct 1455363 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGA-GTTCGTATCATT--TATCCAT 1455307 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || |||||| | ||| ||||| || || |||| || |||| |||||| Sbjct 1455306 TTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAA 1455247 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 | | ||||||| | ||| || ||||||| | ||| ||||| |||||||| Sbjct 1455246 TTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAG 1455187 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025 ||||| ||||| | |||||| |||||| ||||||| | | ||||| ||||| | Sbjct 1455186 TGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTA-C 1455128 Query 14026 TCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 | | ||||| || || || || ||||| || || |||||||||||||||||||| Sbjct 1455127 TTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAA 1455068 Query 14085 TGCCA--ATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAA-TCGG 14140 ||| | | ||||||| ||||| | || || || | || | |||||| || || Sbjct 1455067 TGCTAGCACATGTTTT--ATAAAATGTTTTTCATTTACATTTAA--TTTTTCAAAGTCTT 1455012 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||||| Sbjct 1455011 TCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTAT 1454952 Query 14201 ACATTACCCATATTTCTTTATATAATATAGGA 14232 | | ||||| ||| ||| | |||||| Sbjct 1454951 AAAAATTCCATACTTCAGGATACATAATAGGA 1454920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588566687960