Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 396 4e-105 seq10 178 2e-39 >seq6 Length=916956 Score = 396 bits (438), Expect = 4e-105 Identities = 998/1504 (66%), Gaps = 29/1504 (2%) Strand=Plus/Minus Query 71130 ATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA---ATATTACT 71186 |||||||||||| || ||||| ||| || || ||| ||||| || ||||| Sbjct 509227 ATGAGGATTAACAACAAAGAATTCACCACTTAAAAC---ACGTCTGTAATAAATGTTACT 509171 Query 71187 GGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 71246 ||||| ||||| | || ||||||||||| |||||||| | ||||| || || ||||| Sbjct 509170 TGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAAGCTGTTGGCAT 509111 Query 71247 AGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTC 71306 |||||| | | ||| |||||| | || ||| | ||||| | ||||| | || Sbjct 509110 AGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTTTTTAATAAATC 509051 Query 71307 CCAATTCCAA-AGATCCGATGGTACAA---CNNNNNNNNNNNNNNNNNNNNNNATGCCGT 71362 ||||| |||| | | || ||| | || || | Sbjct 509050 CCAATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGTAATATTCCTT 508992 Query 71363 TACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAA 71421 || || | | | | || ||||| || |||||||| | || || | |||| | Sbjct 508991 GGCTTGCTGGACTACCTTG-ATATGATTCATATGGTCCACTTACTTGTGCCAATTCAACA 508933 Query 71422 CTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAAT-CTTCTTATTGAGATCTTGTGC 71480 | ||||| || ||||||| || ||||| || || ||||| ||| | |||| || Sbjct 508932 GACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGC 508874 Query 71481 TTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCC 71540 ||| ||| ||||||| |||| || ||||| | |||||||||||||| || || Sbjct 508873 TTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 508814 Query 71541 AATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 71600 || || |||||||| ||||| ||||| || |||| |||||| || ||||||||||| Sbjct 508813 TATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATT 508754 Query 71601 AATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGA-CCACATCCTTTAGTTTGA 71659 | || |||||||||| | |||||| | || || ||| | | ||| | || ||| Sbjct 508753 TCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCATATAATTTTT 508695 Query 71660 GAAAATCAAA-----TCTCCCATCTAT-TACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 ||||| ||| | | ||||| ||||| | || |||| || || | || Sbjct 508694 TAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAAT 508635 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 ||||||| ||||| |||| || | ||||| ||||||||| || | |||||| | Sbjct 508634 TACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTGC 508575 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 | || || ||||||||||||| |||||| || ||||| ||||| ||||| | | Sbjct 508574 ATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACA 508515 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 || | || ||||||||| || || || || || || ||| | || | || Sbjct 508514 TATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGCAA 508455 Query 71894 TTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953 ||| | || || |||||| |||||||| |||||||||| ||| || || | Sbjct 508454 GAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAATTCTT 508395 Query 71954 CTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCAT 72013 | ||||| | | ||| || |||||||| || || ||||| || | ||| | || Sbjct 508394 CACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATTAAAGTCCAGTTCTTAT 508335 Query 72014 CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 72073 || ||||||| ||||||||| | |||||| | ||||| ||| ||||| ||| | | Sbjct 508334 TTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAG 508275 Query 72074 TTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 72133 ||| || || || || ||| ||| | | ||| | || | | |||||| |||| Sbjct 508274 CTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAAT 508215 Query 72134 GCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGT 72193 |||| ||||| | |||| || | | || | ||| ||| || ||||||| | Sbjct 508214 GCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACAT 508155 Query 72194 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGG 72253 |||| || || | |||| ||||||| ||||| || | | |||||| ||| |||||| | Sbjct 508154 ATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCATTAG 508095 Query 72254 TCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTGCTAATTGATAGACCTATTCCCCC 72311 | || ||| | || | || || | ||||| | | | |||||| || || Sbjct 508094 TTCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAGCCACACCTATACCTCC 508037 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 ||| ||||| || ||||| ||| | ||||| || ||| | || || ||||| ||| Sbjct 508036 TGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAATC 507977 Query 72372 ATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430 | ||| || ||| || ||| || |||||||||| | | ||||||| ||||| Sbjct 507976 AGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTAA 507918 Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490 |||| ||||||| ||| || ||||| |||||| |||| || || || || || | || Sbjct 507917 ATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTCTAAAG 507858 Query 72491 CTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 | ||| | ||| | ||||||||||| | || | |||||| | ||||||||| | Sbjct 507857 CCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGAGGAC 507798 Query 72551 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 72610 ||||| || || ||||| || || ||||| || |||| || |||||||| |||| Sbjct 507797 GTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAATCCAA 507738 Query 72611 AATA 72614 |||| Sbjct 507737 AATA 507734 >seq10 Length=1634725 Score = 178 bits (196), Expect = 2e-39 Identities = 365/540 (68%), Gaps = 2/540 (0%) Strand=Plus/Minus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 || |||||||||||||| ||||| || ||| || | || | | | | ||| Sbjct 1455468 CCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTTTGTTTT 1455409 Query 42146 TTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 |||| ||||||||| | ||| |||| ||| || |||||||| || ||| Sbjct 1455408 TTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCATTA 1455349 Query 42206 GCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCC 42265 || | || ||| || || || | | |||| |||||| || ||||| || Sbjct 1455348 GCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATAATGCT 1455289 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 42325 || ||||||| || || |||| || |||| ||| | || | | || || | Sbjct 1455288 TTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCA 1455229 Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || ||| ||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 1455228 TCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCT 1455169 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 || ||||| | || || | |||| || | | ||||||||| | ||||| | Sbjct 1455168 ATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTA 1455109 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 ||||||||||| |||||||| ||||| ||||||||||| || | |||||||||||| Sbjct 1455108 GCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATA 1455049 Query 42506 AAATATTTTTCGTCCGGTGTTAATTTATTCCAA-TCATTGATATCTTTAGATATATCTAC 42564 |||| |||||| | ||||||| ||| || || || | ||| | |||| ||||| Sbjct 1455048 AAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTAT 1454990 Query 42565 TTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATA 42624 |||||| | ||||||||||| || || || |||||||| | |||||| | ||| |||| Sbjct 1454989 TTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 1454930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138872819640